Last updated on 2024-05-23 12:49:23 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| dQTG.seq | 12 | ||
| mrMLM | 1 | 8 | 3 |
| mrMLM.GUI | 1 | 11 | |
| QTL.gCIMapping | 1 | 11 | |
| QTL.gCIMapping.GUI | 12 | ||
| SEA | 7 | 5 |
Current CRAN status: OK: 12
Current CRAN status: ERROR: 1, NOTE: 8, OK: 3
Version: 5.0.1
Check: Rd files
Result: NOTE
checkRd: (-1) MultiManhattan.Rd:33: Lost braces; missing escapes or markup?
33 | \item{LogTimes}{Magnification of {-log10(P-value)}; the default is
| ^
checkRd: (-1) MultiManhattan.Rd:35: Lost braces; missing escapes or markup?
35 | \item{LODTimes}{Magnification of {LOD score}; the default is 1.2.}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64
Version: 5.0.1
Check: examples
Result: ERROR
Running examples in 'mrMLM-Ex.R' failed
The error most likely occurred in:
> ### Name: FASTmrMLM
> ### Title: To perform GWAS with FASTmrMLM method
> ### Aliases: FASTmrMLM
>
> ### ** Examples
>
> G1=data(Gen)
> P1=data(Phe)
> Readraw=ReadData(fileGen=Gen,filePhe=Phe,fileKin=NULL,filePS =NULL,
+ Genformat=1)
> InputData=inputData(readraw=Readraw,Genformat=1,method="FASTmrMLM",trait=1)
> result=FASTmrMLM(InputData$doMR$gen,InputData$doMR$phe,
+ InputData$doMR$outATCG,InputData$doMR$genRaw,
+ InputData$doMR$kk,InputData$doMR$psmatrix,0.01,svrad=20,
+ svmlod=3,Genformat=1,CLO=1)
Error in serverSocket(port = port) :
creation of server socket failed: port 11344 cannot be opened
Calls: FASTmrMLM -> makeCluster -> makePSOCKcluster -> serverSocket
Execution halted
Flavor: r-devel-windows-x86_64
Version: 5.0.1
Check: installed package size
Result: NOTE
installed size is 5.2Mb
sub-directories of 1Mb or more:
extdata 1.7Mb
libs 2.3Mb
Flavor: r-release-macos-arm64
Current CRAN status: NOTE: 1, OK: 11
Version: 4.0.2
Check: installed package size
Result: NOTE
installed size is 5.2Mb
sub-directories of 1Mb or more:
extdata 1.7Mb
libs 2.3Mb
Flavor: r-release-macos-arm64
Current CRAN status: NOTE: 1, OK: 11
Version: 3.4
Check: installed package size
Result: NOTE
installed size is 5.0Mb
sub-directories of 1Mb or more:
extdata 3.0Mb
libs 1.0Mb
Flavor: r-oldrel-windows-x86_64
Current CRAN status: OK: 12
Current CRAN status: NOTE: 7, OK: 5
Version: 2.0.1
Check: installed package size
Result: NOTE
installed size is 8.5Mb
sub-directories of 1Mb or more:
R 7.8Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64