ab345b2a5037e17023ca28bfc6fe8bee *DESCRIPTION
3aaff5bc329f5ee26cd2669681c035d8 *NAMESPACE
dc3582f37a01231da982baf9e453d276 *NEWS
dfd5e067842c6a0bf4c08d207258b273 *R/allauc.R
93e838ee58db07bf410d81e3fdaeeeba *R/attenuation.R
94aa7b22611d6a6c2983b833bce2fb59 *R/averageandfilterexprs.R
5eacd959940f77e82b34e0c861d30d2e *R/countna.R
539246032ca8491a30851b3a7db5030b *R/genesECDF.R
b8c807a9cb8879ac068094ea6b594348 *R/kneeid.R
c553a36942d46c1cf874ca6c31266d87 *R/meandifference.R
75a84a43c2e56b611efcaaad8ef552fd *R/plotauc.R
c427b7032b67cd230ee45338652e48ed *R/plotecdf.R
a3b92e465fda6f3d59d5a42afe931936 *R/plothistoknee.R
b47bcd006642a115ef70f96710db3f3c *R/plotmetagenes.R
464bc9fb19190012a6d8e074cfce572d *R/plotmulti.R
16bb3e0a5430658eac7a156dafa1c5a3 *R/preprocessing-blacklisthighmap-utils.R
323e317fe8a4dc98dfdfd56f3243d1c1 *R/preprocessing-blacklisthighmap.R
6dbd404c8179ddffd24df11713212a92 *R/preprocessing-createtablescores.R
a9fc0267bd55df75857ce4f459956897 *R/preprocessing-makewindows.R
65936691f7c4ccfaf7b6b9736eef07c4 *R/preprocessing-retrieveanno.R
2a4b743e06229e0fb557caf1990ad2c8 *R/preprocessing.R
62e516a79a4b76faedebcaa3172d20a1 *R/tepr.R
def495e3c97661ec3d38578ccca7cb60 *R/universegroup.R
3b0801b52e380a1dd036b6212c9a783b *R/utils.R
849b8463b636418ad0485171f576c563 *build/vignette.rds
9b21a58571f2632b90414ff2ffc0b887 *inst/doc/tepr.R
266b58f7d4a31579af017e63f20b183a *inst/doc/tepr.Rmd
e4f7218ee771310062ab4e9c00af51e8 *inst/doc/tepr.html
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dfc2eb4ff1897fdf8c00e92e518d0540 *inst/extdata/AUCcompare_pval.png
9e4c0f212208a6b1d335499eefccb447 *inst/extdata/EGFR.png
a13d9efe7cd63db1ecea1825cf2cbf93 *inst/extdata/allannobed.rds
f855de43170eae2732765c2d21f7bf42 *inst/extdata/allauc.rds
d648a695484a7f57cc1cf4957a611f26 *inst/extdata/allwindowsbed.rds
d1f50a3e5948ce0fef38df5c8f9cbde5 *inst/extdata/attenuation.rds
75a840144a4a53f3f60c69ee1aeebec5 *inst/extdata/averageandfilterexprs.rds
f7644e3dfa9b9604aedf29102a7ce524 *inst/extdata/chromtabtest.rds
37ce12244aa6cb4b24270b8b27c63824 *inst/extdata/countna.rds
a12a4f9feae60e22f494418ecdbbbe15 *inst/extdata/ctrl_rep1_chr13.forward.bg
379516516e25482f046f9616c4bec67d *inst/extdata/ctrl_rep1_chr13.reverse.bg
01e63dd761faa12e1bf5fb00ea3433a7 *inst/extdata/cugusi_6.tsv
fab98d076ff0a1e0bd1ba48acbebb1e1 *inst/extdata/exptab-preprocessing.csv
df365f3f9ed7c7b49ff52588ba0f57df *inst/extdata/exptab.csv
72f60846c3327e2ec8de291a2ce0a4fa *inst/extdata/finaltab-chr13.tsv
6b59c8cbfa4502c57e0a96885d6ea43e *inst/extdata/finaltab.rds
11e69e4daf51361f1f895cf55294e5da *inst/extdata/gencode-chr13.gtf
34632c4d5548e4060a93aa63dff03944 *inst/extdata/genesecdf.rds
44a6144f790c7e0367b231e4cbc01a50 *inst/extdata/hg38-blacklist-chr13.v2.bed
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6139ac127473df0c6b36bc05e647200e *inst/extdata/histo_percent.png
069863055e9e72cbfb0f38504c06ab7f *inst/extdata/k50.umap.chr13.hg38.0.8.bed
f06c69679a69a4d2d2a45e67b61b6d89 *inst/extdata/kneeid.rds
ec70606c7581f603d892113d71e9a939 *inst/extdata/meandiff.rds
fa858fc79240095251837ac51f98f076 *inst/extdata/metagene_attenuation.png
959e52cbee812f4271596699096d59c7 *inst/extdata/structure.png
db662961f9267aac4c2ba255864bff9a *inst/extdata/tepr.rds
73b4f7c8d850449450bf2b1a269cb49a *inst/extdata/universegroup.rds
ee6a41f58d6e830d35481601e33590d0 *man/allauc.Rd
2f7527d3fdfcba9ceee543c1c00c8b13 *man/attenuation.Rd
c31b6f78acdf4d45d198661e21abc4a0 *man/averageandfilterexprs.Rd
5b7dc13073219d5ea11dfe05b6d41f01 *man/blacklisthighmap.Rd
3ad2b7058101a3ba020378af735471cd *man/checkexptab.Rd
bec2dbcbae1c82d7bbc0c5a85aacc298 *man/countna.Rd
7c2d8382b0af5f7a4c22526874728364 *man/createtablescores.Rd
1f38e097f0d58396a73390b62398890f *man/genesECDF.Rd
1ab36ff3b88b76583474303fdf1fcb94 *man/kneeallconds.Rd
69918d16eb541fe442dd848b1c377696 *man/kneeid.Rd
501b6e59c5adfb91787509f4c74b443c *man/makewindows.Rd
86ec17dc1a41705ec1f9e315d484fa6f *man/meandifference.Rd
95a853cd4b96dcb9e68f37ae1ce58ef3 *man/plotauc.Rd
bc9d61398a5a24b4c92d8404f9ddf347 *man/plotecdf.Rd
fa4d6a03efd6f8dfd8c4a611b0f5a231 *man/plothistoknee.Rd
d7088227d06f42d2c5a7389fc78a13d8 *man/plotmetagenes.Rd
cb4025277cfb13e6b37528122b916aa2 *man/plotmulti.Rd
ac41920bed90d30f45e45d26e739aaf1 *man/preprocessing.Rd
8aaf4c2dc7883f56b800ec4de0cdb219 *man/retrieveanno.Rd
de9ff365e7fe5b4527a76b0e0a63c792 *man/retrievechrom.Rd
4ab0ab00b7a7843cf3d8431ba438b312 *man/showallcomp.Rd
38f03926efa90a6c2f9a370a3b342a53 *man/tepr.Rd
f6799923d90518daed4610d6bbec677e *man/teprmulti.Rd
ca9f8481a80af4cd94870d0e821ed58c *man/universegroup.Rd
9d47658ce72d7ff70a069a8d7f5a50d3 *tests/testthat.R
a89624e52d7b684debc57ced42feb713 *tests/testthat/test-allauc.R
de62ef18cc623535c446c7eafe9a9b04 *tests/testthat/test-attenuation.R
6e0b4faa1e4bd026d65a05ce331cffd6 *tests/testthat/test-averageandfilterexprs.R
a60b505d9030f709944be2ccc1203271 *tests/testthat/test-checkexptab.R
de5005f218e8c5aae23e3bf2423e791e *tests/testthat/test-countna.R
0829a657d968c4157d3994ec2d1a59d9 *tests/testthat/test-genesECDF.R
560a1ea9fdbece1d153fb9a91abdfee0 *tests/testthat/test-kneeid.R
48a21809369010317d550d6dd3fac18e *tests/testthat/test-meandifference.R
5a9d5b8f12c7655dbfe61ac2af88917a *tests/testthat/test-preprocessing-blacklisthighmap.R
7b30f2a50697a39af8ed164d751e39ed *tests/testthat/test-preprocessing-createtablescores.R
65502652e8c208ff22115b16dcfa4f8b *tests/testthat/test-preprocessing-makewindows.R
66e1bc58c4a8f5c6419dd1f3fadece90 *tests/testthat/test-preprocessing-retrieveanno.R
1fcc3e115a1378c16e09126c2b61774d *tests/testthat/test-preprocessing.R
17216bc4b6dbf74ca26ed0015af1d44c *tests/testthat/test-tepr.R
818825a77097d739b3f50f53920286cd *tests/testthat/test-universegroup.R
266b58f7d4a31579af017e63f20b183a *vignettes/tepr.Rmd
