Last updated on 2025-05-07 12:50:27 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4.7.1 | 3.67 | 55.76 | 59.43 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.4.7.1 | 2.65 | 42.79 | 45.44 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.4.7.1 | 92.91 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.4.7.1 | 48.15 | ERROR | |||
| r-devel-windows-x86_64 | 1.4.7.1 | 5.00 | 127.00 | 132.00 | OK | |
| r-patched-linux-x86_64 | 1.4.7.1 | 4.29 | 54.34 | 58.63 | OK | |
| r-release-linux-x86_64 | 1.4.7.1 | 3.52 | 54.10 | 57.62 | OK | |
| r-release-macos-arm64 | 1.4.7.1 | 36.00 | OK | |||
| r-release-macos-x86_64 | 1.4.7.1 | 84.00 | OK | |||
| r-release-windows-x86_64 | 1.4.7.1 | 5.00 | 126.00 | 131.00 | OK | |
| r-oldrel-macos-arm64 | 1.4.7.1 | 38.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.4.7.1 | 60.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.4.7.1 | 5.00 | 130.00 | 135.00 | OK |
Version: 1.4.7.1
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Karline Soetaert <karline.soetaert@nioz.nl>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Karline",
family = "Soetaert",
role = c("aut", "cre"),
email = "karline.soetaert@nioz.nl"),
person(given = "Dick",
family = "van Oevelen",
role = "aut",
email = "dick.vanoevelen@nioz.nl"))
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.4.7.1
Check: examples
Result: ERROR
Running examples in ‘LIM-Ex.R’ failed
The error most likely occurred in:
> ### Name: LIMEcoli
> ### Title: The Escherichia Coli Core Metabolism: Reaction network model
> ### specificiation
> ### Aliases: LIMEcoli
> ### Keywords: datasets
>
> ### ** Examples
>
>
>
> # 1. parsimonious (simplest) solution
> pars <- Ldei(LIMEcoli)
>
> # 2. the ranges of each reaction
> xr <- Xranges(LIMEcoli, central = TRUE, full = TRUE)
Warning in lsei(E = E, F = F, G = G, H = H) :
LSEI error: inequalities contradictory
[1] "problem infeasible"
Warning in xranges(lim$A, lim$B, lim$G, lim$H, ...) :
cannot proceed: problem not solvable at requested tolerance 1e-08
>
> # 3. the optimal solution - solved with linear programming
> LP <- Linp(LIMEcoli)
> Optimal <- t(LP$X)
>
> # show the results
> data.frame(pars = pars$X, Optimal, xr[ ,1:3])
Error in xr[, 1:3] : subscript out of bounds
Calls: data.frame
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.4.7.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘LIM.Rnw’ using Sweave
--- finished re-building ‘LIM.Rnw’
--- re-building ‘LIMecoli.Rnw’ using Sweave
Loading required package: limSolve
Loading required package: diagram
Loading required package: shape
Warning in lsei(E = E, F = F, G = G, H = H) :
LSEI error: inequalities contradictory
Warning in xranges(lim$A, lim$B, lim$G, lim$H, ...) :
cannot proceed: problem not solvable at requested tolerance 1e-08
Error: processing vignette 'LIMecoli.Rnw' failed with diagnostics:
chunk 7 (label = range)
Error in plot.window(xlim = xlim, ylim = ylim, log = log) :
NAs not allowed in 'xlim'
--- failed re-building ‘LIMecoli.Rnw’
SUMMARY: processing the following file failed:
‘LIMecoli.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc