Last updated on 2025-05-03 21:51:10 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 642.62 | 480.44 | 1123.06 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 543.17 | 395.98 | 939.15 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | 0.53 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 2253.77 | NOTE | |||
| r-devel-windows-x86_64 | 1.0.1 | 647.00 | 535.00 | 1182.00 | OK | |
| r-patched-linux-x86_64 | 1.0.1 | 676.76 | 512.35 | 1189.11 | OK | |
| r-release-linux-x86_64 | OK | |||||
| r-release-macos-arm64 | 1.0.1 | 458.00 | OK | |||
| r-release-macos-x86_64 | 1.0.1 | 598.00 | OK | |||
| r-release-windows-x86_64 | 1.0.1 | 636.00 | 522.00 | 1158.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.1 | 241.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.0.1 | 282.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.0.1 | 724.00 | 675.00 | 1399.00 | NOTE |
Version: 1.0.1
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘RcppParallel’ ‘rstantools’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Differential-Synth.Rmd’ using rmarkdown
--- finished re-building ‘Differential-Synth.Rmd’
--- re-building ‘Dropout.Rmd’ using rmarkdown
--- finished re-building ‘Dropout.Rmd’
--- re-building ‘Getting-Started.Rmd’ using rmarkdown
--- finished re-building ‘Getting-Started.Rmd’
--- re-building ‘NSS.Rmd’ using rmarkdown
--- finished re-building ‘NSS.Rmd’
--- re-building ‘Troubleshooting.Rmd’ using rmarkdown
*** caught segfault ***
address 0x5566, cause 'memory not mapped'
Traceback:
1: dev.off(dv)
2: eng_r(options)
3: block_exec(params)
4: call_block(x)
5: process_group(group)
6: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } })
7: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (xfun::pkg_available("rlang", "1.0.0")) { if (is_R_CMD_build() || is_R_CMD_check()) { cnd = tryCatch(rlang::entrace(e), error = identity) error <<- format(cnd) } else { rlang::entrace(e) } } }), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
8: process_file(text, output)
9: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
10: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
11: vweave_rmarkdown(...)
12: engine$weave(file, quiet = quiet, encoding = enc)
13: doTryCatch(return(expr), name, parentenv, handler)
14: tryCatchOne(expr, names, parentenv, handlers[[1L]])
15: tryCatchList(expr, classes, parentenv, handlers)
16: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
17: tools:::.buildOneVignette("Troubleshooting.Rmd", "/data/gannet/ripley/R/packages/tests-clang/bakR.Rcheck/vign_test/bakR", TRUE, FALSE, "Troubleshooting", "UTF-8", "/tmp/RtmpD8TzhL/working_dir/Rtmp4enlUg/file30d9d968da8cc6.rds")
An irrecoverable exception occurred. R is aborting now ...
--- re-building ‘bakR-Fn.Rmd’ using rmarkdown
--- finished re-building ‘bakR-Fn.Rmd’
--- re-building ‘bakR-Quickstart.Rmd’ using rmarkdown
--- finished re-building ‘bakR-Quickstart.Rmd’
SUMMARY: processing the following file failed:
‘Troubleshooting.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.1
Check: installed package size
Result: NOTE
installed size is 103.3Mb
sub-directories of 1Mb or more:
libs 101.5Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.1
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64