Last updated on 2025-05-04 03:50:54 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.3 | 80.17 | 118.54 | 198.71 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.7 | 446.76 | 1117.64 | 1564.40 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.7 | 2627.34 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.7 | 2904.57 | NOTE | |||
| r-devel-windows-x86_64 | 1.0.7 | 460.00 | 600.00 | 1060.00 | OK | |
| r-patched-linux-x86_64 | 1.0.7 | 570.56 | 1552.27 | 2122.83 | OK | |
| r-release-linux-x86_64 | OK | |||||
| r-release-macos-arm64 | 1.0.7 | 303.00 | OK | |||
| r-release-macos-x86_64 | 1.0.7 | 687.00 | OK | |||
| r-release-windows-x86_64 | 1.0.7 | 555.00 | 715.00 | 1270.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.7 | 314.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.0.7 | 760.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.0.7 | 91.00 | 215.00 | 306.00 | NOTE |
Version: 1.0.7
Check: whether startup messages can be suppressed
Result: NOTE
using C++ compiler: ‘clang version 20.1.3’
make[1]: Entering directory '/tmp/Rtmp0XaJWl/working_dir/RtmpypD3hX/gkwreg_compile_20250502052009'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_gkwreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/Rtmp0XaJWl/working_dir/RtmpypD3hX/gkwreg_compile_20250502052009/gkwreg.cpp -o /tmp/Rtmp0XaJWl/working_dir/RtmpypD3hX/gkwreg_compile_20250502052009/gkwreg.o
In file included from /tmp/Rtmp0XaJWl/working_dir/RtmpypD3hX/gkwreg_compile_20250502052009/gkwreg.cpp:12:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /tmp/Rtmp0XaJWl/working_dir/RtmpypD3hX/gkwreg_compile_20250502052009/gkwreg.cpp:12:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/Rtmp0XaJWl/working_dir/RtmpypD3hX/gkwreg_compile_20250502052009/gkwreg.so /tmp/Rtmp0XaJWl/working_dir/RtmpypD3hX/gkwreg_compile_20250502052009/gkwreg.o
make[1]: Leaving directory '/tmp/Rtmp0XaJWl/working_dir/RtmpypD3hX/gkwreg_compile_20250502052009'
make[1]: Entering directory '/tmp/Rtmp0XaJWl/working_dir/RtmpypD3hX/gkwreg_compile_20250502052009'
make[1]: Leaving directory '/tmp/Rtmp0XaJWl/working_dir/RtmpypD3hX/gkwreg_compile_20250502052009'
It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.7
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘RcppEigen’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.7
Check: Rd \usage sections
Result: NOTE
*** caught segfault ***
address 0x7f45b8b55639, cause 'invalid permissions'
An irrecoverable exception occurred. R is aborting now ...
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.7
Check: installed package size
Result: NOTE
installed size is 10.6Mb
sub-directories of 1Mb or more:
libs 9.2Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.0.7
Check: whether the namespace can be loaded with stated dependencies
Result: NOTE
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/gkwbetareg_20250502114035/gkwbetareg.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'gkwbetareg': cannot change working directory
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/bkwreg_20250502114035/bkwreg.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'bkwreg': cannot change working directory
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/ekwreg_20250502114035/ekwreg.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'ekwreg': cannot change working directory
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/gkwmletmb_20250502114035/gkwmletmb.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'gkwmletmb': cannot change working directory
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/gkwreg_20250502114035/gkwreg.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'gkwreg': cannot change working directory
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/kkwreg_20250502114035/kkwreg.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'kkwreg': cannot change working directory
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/kwreg_20250502114035/kwreg.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'kwreg': cannot change working directory
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/mcreg_20250502114035/mcreg.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'mcreg': cannot change working directory
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
Flavor: r-oldrel-windows-x86_64