Last updated on 2026-10-23 12:50:03 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.7.5 | 17.93 | 399.66 | 417.59 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.7.5 | 13.62 | 283.74 | 297.36 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.7.5 | 16.00 | 318.70 | 334.70 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.7.5 | 13.00 | 258.64 | 271.64 | OK | |
| r-devel-windows-x86_64 | 0.7.5 | 26.00 | 410.00 | 436.00 | OK | |
| r-patched-linux-x86_64 | 0.7.5 | 19.60 | 378.80 | 398.40 | OK | |
| r-release-linux-x86_64 | 0.7.5 | 17.17 | 377.76 | 394.93 | OK | |
| r-release-macos-arm64 | 0.7.5 | 5.00 | 44.00 | 49.00 | OK | |
| r-release-macos-x86_64 | 0.7.5 | 14.00 | 158.00 | 172.00 | OK | |
| r-release-windows-x86_64 | 0.7.5 | 25.00 | 385.00 | 410.00 | OK | |
| r-oldrel-macos-arm64 | 0.7.5 | 6.00 | 60.00 | 66.00 | OK | |
| r-oldrel-macos-x86_64 | 0.7.5 | 13.00 | 155.00 | 168.00 | OK | |
| r-oldrel-windows-x86_64 | 0.7.5 | 31.00 | 508.00 | 539.00 | ERROR |
Version: 0.7.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'DoE-1_DCA.qmd' using html
processing file: DoE-1_DCA.qmd
output file: DoE-1_DCA.knit.md
pandoc
to: html
output-file: DoE-1_DCA.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
D:/RCompile/CRANpkg/lib/4.5/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
variables: {}
metadata
document-css: false
lang: en
engines:
- path: C:\Program Files\Quarto\share\extension-subtrees\julia-engine\_extensions\julia-engine\julia-engine.js
minimal: true
theme: none
title: 'Single-Factor Design: CRD'
description: |
Complete Randomize Design
vignette: |
%\VignetteIndexEntry{DoE-1_CRD} %\VignetteEncoding{UTF-8} %\VignetteEngine{quarto::html}
knitr:
opts_chunk:
collapse: true
comment: '#>'
echo: false
warning: false
message: false
editor_options:
chunk_output_type: console
Output created: DoE-1_DCA.html
--- finished re-building 'DoE-1_DCA.qmd'
--- re-building 'DoE-1_RCBD.qmd' using html
processing file: DoE-1_RCBD.qmd
output file: DoE-1_RCBD.knit.md
pandoc
to: html
output-file: DoE-1_RCBD.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
D:/RCompile/CRANpkg/lib/4.5/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
variables: {}
metadata
document-css: false
lang: en
engines:
- path: C:\Program Files\Quarto\share\extension-subtrees\julia-engine\_extensions\julia-engine\julia-engine.js
minimal: true
theme: none
title: 'Single-Factor Design: RCBD'
description: |
Randomized Complete Block Design
vignette: |
%\VignetteIndexEntry{DoE-1_RCBD} %\VignetteEncoding{UTF-8} %\VignetteEngine{quarto::html}
knitr:
opts_chunk:
collapse: true
comment: '#>'
echo: false
warning: false
message: false
editor_options:
chunk_output_type: console
Output created: DoE-1_RCBD.html
--- finished re-building 'DoE-1_RCBD.qmd'
--- re-building 'DoE-2_AUG.qmd' using html
processing file: DoE-2_AUG.qmd
output file: DoE-2_AUG.knit.md
pandoc
to: html
output-file: DoE-2_AUG.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
D:/RCompile/CRANpkg/lib/4.5/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
variables: {}
metadata
document-css: false
lang: en
engines:
- path: C:\Program Files\Quarto\share\extension-subtrees\julia-engine\_extensions\julia-engine\julia-engine.js
minimal: true
theme: none
title: 'Two-Factors Design: Augmented Design in RCBD'
description: |
Augmented Design in RCBD
vignette: |
%\VignetteIndexEntry{DoE-2_AUG} %\VignetteEncoding{UTF-8} %\VignetteEngine{quarto::html}
knitr:
opts_chunk:
collapse: true
comment: '#>'
echo: false
warning: false
message: false
editor_options:
chunk_output_type: console
Output created: DoE-2_AUG.html
--- finished re-building 'DoE-2_AUG.qmd'
--- re-building 'DoE-2_DCA.qmd' using html
processing file: DoE-2_DCA.qmd
output file: DoE-2_DCA.knit.md
pandoc
to: html
output-file: DoE-2_DCA.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
D:/RCompile/CRANpkg/lib/4.5/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
variables: {}
metadata
document-css: false
lang: en
engines:
- path: C:\Program Files\Quarto\share\extension-subtrees\julia-engine\_extensions\julia-engine\julia-engine.js
minimal: true
theme: none
title: 'Two-Factors Design: CRD'
description: |
Factorial Complete Randomize Design
vignette: |
%\VignetteIndexEntry{DoE-2_CRD} %\VignetteEncoding{UTF-8} %\VignetteEngine{quarto::html}
knitr:
opts_chunk:
collapse: true
comment: '#>'
echo: false
warning: false
message: false
editor_options:
chunk_output_type: console
Output created: DoE-2_DCA.html
--- finished re-building 'DoE-2_DCA.qmd'
--- re-building 'DoE-2_RCBD.qmd' using html
processing file: DoE-2_RCBD.qmd
output file: DoE-2_RCBD.knit.md
pandoc
to: html
output-file: DoE-2_RCBD.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
D:/RCompile/CRANpkg/lib/4.5/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
variables: {}
metadata
document-css: false
lang: en
engines:
- path: C:\Program Files\Quarto\share\extension-subtrees\julia-engine\_extensions\julia-engine\julia-engine.js
minimal: true
theme: none
title: 'Two-Factors Design: RCBD'
description: |
Factorial Complete Randomize Block Design
vignette: |
%\VignetteIndexEntry{DoE-2_RCBD} %\VignetteEncoding{UTF-8} %\VignetteEngine{quarto::html}
knitr:
opts_chunk:
collapse: true
comment: '#>'
echo: false
warning: false
message: false
editor_options:
chunk_output_type: console
Output created: DoE-2_RCBD.html
--- finished re-building 'DoE-2_RCBD.qmd'
--- re-building 'DoE-2_SPLIT.qmd' using html
processing file: DoE-2_SPLIT.qmd
output file: DoE-2_SPLIT.knit.md
pandoc
to: html
output-file: DoE-2_SPLIT.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
D:/RCompile/CRANpkg/lib/4.5/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
variables: {}
metadata
document-css: false
lang: en
engines:
- path: C:\Program Files\Quarto\share\extension-subtrees\julia-engine\_extensions\julia-engine\julia-engine.js
minimal: true
theme: none
title: 'Two-Factors Design: Split-Plot in RCBD'
description: |
Split-Plot in RCBD
vignette: |
%\VignetteIndexEntry{DoE-2_SPLIT} %\VignetteEncoding{UTF-8} %\VignetteEngine{quarto::html}
knitr:
opts_chunk:
collapse: true
comment: '#>'
echo: false
warning: false
message: false
editor_options:
chunk_output_type: console
Output created: DoE-2_SPLIT.html
--- finished re-building 'DoE-2_SPLIT.qmd'
--- re-building 'DoE-3_DCA.qmd' using html
processing file: DoE-3_DCA.qmd
output file: DoE-3_DCA.knit.md
pandoc
to: html
output-file: DoE-3_DCA.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
D:/RCompile/CRANpkg/lib/4.5/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
variables: {}
metadata
document-css: false
lang: en
engines:
- path: C:\Program Files\Quarto\share\extension-subtrees\julia-engine\_extensions\julia-engine\julia-engine.js
minimal: true
theme: none
title: 'Three-Factors Design: CRD'
description: |
Factorial Complete Randomize Design
vignette: |
%\VignetteIndexEntry{DoE-3_CRD} %\VignetteEncoding{UTF-8} %\VignetteEngine{quarto::html}
knitr:
opts_chunk:
collapse: true
comment: '#>'
echo: false
warning: false
message: false
editor_options:
chunk_output_type: console
Output created: DoE-3_DCA.html
--- finished re-building 'DoE-3_DCA.qmd'
--- re-building 'DoE-3_RCBD.qmd' using html
processing file: DoE-3_RCBD.qmd
output file: DoE-3_RCBD.knit.md
pandoc
to: html
output-file: DoE-3_RCBD.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
D:/RCompile/CRANpkg/lib/4.5/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
variables: {}
metadata
document-css: false
lang: en
engines:
- path: C:\Program Files\Quarto\share\extension-subtrees\julia-engine\_extensions\julia-engine\julia-engine.js
minimal: true
theme: none
title: 'Three-Factors Design: RCBD'
description: |
Factorial Complete Randomize Block Design
vignette: |
%\VignetteIndexEntry{DoE-3_RCBD} %\VignetteEncoding{UTF-8} %\VignetteEngine{quarto::html}
knitr:
opts_chunk:
collapse: true
comment: '#>'
echo: false
warning: false
message: false
editor_options:
chunk_output_type: console
Output created: DoE-3_RCBD.html
--- finished re-building 'DoE-3_RCBD.qmd'
--- re-building 'apps.qmd' using html
processing file: apps.qmd
output file: apps.knit.md
pandoc
to: html
output-file: apps.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
D:/RCompile/CRANpkg/lib/4.5/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
variables: {}
metadata
document-css: false
lang: en
engines:
- path: C:\Program Files\Quarto\share\extension-subtrees\julia-engine\_extensions\julia-engine\julia-engine.js
minimal: true
theme: none
title: Apps
description: |
inti: interactive apps.
author: Flavio Lozano-Isla
vignette: |
%\VignetteIndexEntry{Apps} %\VignetteEncoding{UTF-8} %\VignetteEngine{quarto::html}
knitr:
opts_chunk:
collapse: true
comment: '#>'
echo: false
warning: false
message: false
editor_options:
chunk_output_type: console
Output created: apps.html
--- finished re-building 'apps.qmd'
--- re-building 'heritability.qmd' using html
processing file: heritability.qmd
output file: heritability.knit.md
pandoc
to: html
output-file: heritability.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
D:/RCompile/CRANpkg/lib/4.5/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
variables: {}
metadata
document-css: false
lang: en
engines:
- path: C:\Program Files\Quarto\share\extension-subtrees\julia-engine\_extensions\julia-engine\julia-engine.js
minimal: true
theme: none
title: Broad-sense heritability in plant breeding
description: |
How to calculate the heritability in plant breeding.
author: Maria Belen Kistner & Flavio Lozano-Isla
vignette: |
%\VignetteIndexEntry{heritability} %\VignetteEncoding{UTF-8} %\VignetteEngine{quarto::html}
knitr:
opts_chunk:
collapse: true
comment: '#>'
echo: false
warning: false
message: false
editor_options:
chunk_output_type: console
bibliography:
- files/pkgs.bib
- files/book.bib
link-citations: true
colorlinks: true
csl: https://www.zotero.org/styles/crop-science
nocite: |
[@schmidt2019Estimating; @schmidt2019Heritability; @bernal-vasquez2016Outliera; @buntaran2020Cross; @bolker2021Mean]
Could not fetch https://www.zotero.org/styles/crop-science
HttpExceptionRequest Request {
host = "www.zotero.org"
port = 443
secure = True
requestHeaders = []
path = "/styles/crop-science"
queryString = ""
method = "GET"
proxy = Nothing
rawBody = False
redirectCount = 10
responseTimeout = ResponseTimeoutDefault
requestVersion = HTTP/1.1
proxySecureMode = ProxySecureWithConnect
}
(StatusCodeException (Response {responseStatus = Status {statusCode = 503, statusMessage = "Service Unavailable"}, responseVersion = HTTP/1.1, responseHeaders = [("Content-Type","text/html; charset=UTF-8"),("Content-Length","2081"),("Connection","keep-alive"),("Date","Wed, 21 Oct 2026 13:37:00 GMT"),("Content-Encoding","gzip"),("Server","Apache"),("Strict-Transport-Security","max-age=31536000; includeSubDomains; preload"),("Retry-After","900"),("Cache-Control","no-store"),("Last-Modified","Wed, 21 Oct 2026 13:00:56 GMT"),("ETag","\"1269-65e595685861e;\255\255"),("Accept-Ranges","bytes"),("Vary","Accept-Encoding"),("X-Cache","Error from cloudfront"),("Via","1.1 3ae34da451a19efe92d6bea00849f488.cloudfront.net (CloudFront)"),("X-Amz-Cf-Pop","FRA60-P12"),("Alt-Svc","h3=\":443\"; ma=86400"),("X-Amz-Cf-Id","6j1Fg0KpUdMIorT-3YmToxpuuwDHpJ4cyrD2gKDwa2029m9mG_WeSw==")], responseBody = (), responseCookieJar = CJ {expose = []}, responseClose' = ResponseClose, responseOriginalRequest = Request {
host = "www.zotero.org"
port = 443
secure = True
requestHeaders = []
path = "/styles/crop-science"
queryString = ""
method = "GET"
proxy = Nothing
rawBody = False
redirectCount = 10
responseTimeout = ResponseTimeoutDefault
requestVersion = HTTP/1.1
proxySecureMode = ProxySecureWithConnect
}
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WARN: Error encountered when rendering files
Error: processing vignette 'heritability.qmd' failed with diagnostics:
! Error running quarto CLI from R.
Caused by error:
! Could not evaluate cli `{}` expression: `heritability`.
Caused by error:
! object 'heritability' not found
--- failed re-building 'heritability.qmd'
--- re-building 'policy.qmd' using html
processing file: policy.qmd
output file: policy.knit.md
pandoc
to: html
output-file: policy.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
D:/RCompile/CRANpkg/lib/4.5/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
variables: {}
metadata
document-css: false
lang: en
engines:
- path: C:\Program Files\Quarto\share\extension-subtrees\julia-engine\_extensions\julia-engine\julia-engine.js
minimal: true
theme: none
title: Inkaverse Privacy Policy
vignette: |
%\VignetteIndexEntry{policy} %\VignetteEncoding{UTF-8} %\VignetteEngine{quarto::html}
knitr:
opts_chunk:
collapse: true
comment: '#>'
echo: false
warning: false
message: false
editor_options:
chunk_output_type: console
Output created: policy.html
--- finished re-building 'policy.qmd'
--- re-building 'rticles.qmd' using html
processing file: rticles.qmd
output file: rticles.knit.md
pandoc
to: html
output-file: rticles.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
D:/RCompile/CRANpkg/lib/4.5/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
variables: {}
metadata
document-css: false
lang: en
engines:
- path: C:\Program Files\Quarto\share\extension-subtrees\julia-engine\_extensions\julia-engine\julia-engine.js
minimal: true
theme: none
title: Rticles
description: |
Rticles: scientific documents with R.
author: Flavio Lozano-Isla
vignette: |
%\VignetteIndexEntry{Rticles} %\VignetteEncoding{UTF-8} %\VignetteEngine{quarto::html}
knitr:
opts_chunk:
collapse: true
comment: '#>'
echo: false
warning: false
message: false
editor_options:
chunk_output_type: console
Output created: rticles.html
--- finished re-building 'rticles.qmd'
--- re-building 'tarpuy.qmd' using html
processing file: tarpuy.qmd
output file: tarpuy.knit.md
pandoc
to: html
output-file: tarpuy.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
D:/RCompile/CRANpkg/lib/4.5/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
variables: {}
metadata
document-css: false
lang: en
engines:
- path: C:\Program Files\Quarto\share\extension-subtrees\julia-engine\_extensions\julia-engine\julia-engine.js
minimal: true
theme: none
title: Tarpuy
description: |
Tarpuy: field book experimental plans.
author: Flavio Lozano-Isla
vignette: |
%\VignetteIndexEntry{Tarpuy} %\VignetteEncoding{UTF-8} %\VignetteEngine{quarto::html}
knitr:
opts_chunk:
collapse: true
comment: '#>'
echo: false
warning: false
message: false
editor_options:
chunk_output_type: console
Output created: tarpuy.html
--- finished re-building 'tarpuy.qmd'
--- re-building 'yupana.qmd' using html
processing file: yupana.qmd
output file: yupana.knit.md
pandoc
to: html
output-file: yupana.html
standalone: true
embed-resources: true
wrap: none
default-image-extension: png
css:
- >-
D:/RCompile/CRANpkg/lib/4.5/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css
variables: {}
metadata
document-css: false
lang: en
engines:
- path: C:\Program Files\Quarto\share\extension-subtrees\julia-engine\_extensions\julia-engine\julia-engine.js
minimal: true
theme: none
title: Yupana
description: |
Yupana: experimental design analysis.
author: Flavio Lozano-Isla
vignette: |
%\VignetteIndexEntry{Yupana} %\VignetteEncoding{UTF-8} %\VignetteEngine{quarto::html}
knitr:
opts_chunk:
collapse: true
comment: '#>'
echo: false
warning: false
message: false
editor_options:
chunk_output_type: console
Output created: yupana.html
--- finished re-building 'yupana.qmd'
SUMMARY: processing the following file failed:
'heritability.qmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64