Last updated on 2026-09-30 13:54:26 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.6 | 25.43 | 709.60 | 735.03 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.1.6 | 17.63 | 450.31 | 467.94 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.6 | 19.00 | 462.05 | 481.05 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.6 | 18.00 | 439.09 | 457.09 | ERROR | |
| r-devel-windows-x86_64 | 0.1.6 | 34.00 | 709.00 | 743.00 | OK | |
| r-patched-linux-x86_64 | 0.1.6 | 26.09 | 700.51 | 726.60 | OK | |
| r-release-linux-x86_64 | 0.1.6 | 23.60 | 688.59 | 712.19 | ERROR | |
| r-release-macos-arm64 | 0.1.6 | 6.00 | 141.00 | 147.00 | OK | |
| r-release-macos-x86_64 | 0.1.6 | 18.00 | 461.00 | 479.00 | OK | |
| r-release-windows-x86_64 | 0.1.6 | 31.00 | 658.00 | 689.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.1.6 | 6.00 | 141.00 | 147.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.6 | 18.00 | 426.00 | 444.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.6 | 43.00 | 948.00 | 991.00 | ERROR |
Version: 0.1.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [275s/342s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> options(rgl.useNULL = TRUE)
> library(testthat)
> library(junco)
Loading required package: formatters
Attaching package: 'formatters'
The following object is masked from 'package:base':
%||%
Loading required package: rtables
Loading required package: magrittr
Attaching package: 'magrittr'
The following objects are masked from 'package:testthat':
equals, is_less_than, not
Attaching package: 'rtables'
The following object is masked from 'package:utils':
str
>
> test_check("junco")
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining with `by = join_by(USUBJID)`
Joining with `by = join_by(USUBJID, ARM)`
mmrm() registered as emmeans extension
none of the combination levels appeared in the colspan treatment map; adding them automatically.
none of the combination levels appeared in the colspan treatment map; adding them automatically.
none of the combination levels appeared in the colspan treatment map; adding them automatically.
[1] 84 84 67 84
Saving _problems/test-summarize_ancova-719.R
[ FAIL 1 | WARN 0 | SKIP 25 | PASS 840 ]
══ Skipped tests (25) ══════════════════════════════════════════════════════════
• On CRAN (25): 'test-a_summarize_aval_chg_diff.R:472:1', 'test-ancova.R:4:1',
'test-docx_exporter_functions.R:9:1', 'test-estimate_proportion_diff.R:1:1',
'test-lsmeans.R:318:1', 'test-lsmeans.R:339:1', 'test-lsmeans.R:348:1',
'test-lsmeans.R:359:1', 'test-lsmeans.R:631:1', 'test-lsmeans.R:658:1',
'test-mmrm.R:81:1', 'test-mmrm.R:151:1', 'test-mmrm_rbmi.R:5:1',
'test-rbmi.R:73:3', 'test-rbmi.R:79:3', 'test-rbmi.R:120:3',
'test-rbmi.R:139:3', 'test-rbmi.R:152:3', 'test-rbmi.R:171:3',
'test-summarize_ancova.R:152:1', 'test-summarize_mmrm.R:15:1',
'test-summarize_mmrm.R:33:1', 'test-summarize_mmrm.R:70:1',
'test-tabulate_lsmeans.R:40:1', 'test-tt_to_tblfile.R:193:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-summarize_ancova.R:719:3'): a_summarize_ancova_j with multiple combined columns ──
Snapshot of code has changed:
old[5:10] vs new[5:10]
(N=86) (N=96) (N=86) (N=72) (N=182) (N=158) (N=254)
———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————
Adjusted comparison (covariates SEX)
- n 83 94 83 72 177 155 249
+ n 83 94 84 72 178 156 250
- Adjusted Mean (95% CI) -2.62 (-4.43, -0.81) -0.11 (-1.81, 1.59) -0.75 (-2.56, 1.06) -1.91 (-3.86, 0.04) -0.41 (-1.65, 0.83) -1.29 (-2.61, 0.04) -0.84 (-1.89, 0.20)
+ Adjusted Mean (95% CI) -2.64 (-4.53, -0.74) -0.11 (-1.89, 1.67) -1.90 (-3.78, -0.02) -1.89 (-3.92, 0.15) -0.95 (-2.25, 0.34) -1.89 (-3.27, -0.51) -1.22 (-2.31, -0.13)
- Difference in Adjusted Means (95% CI) 2.52 (0.03, 5.00) 1.87 (-0.69, 4.43) 0.71 (-1.95, 3.37) 2.21 (0.02, 4.41) 1.33 (-0.91, 3.58) 1.78 (-0.31, 3.87)
+ Difference in Adjusted Means (95% CI) 2.53 (-0.07, 5.12) 0.74 (-1.93, 3.41) 0.75 (-2.04, 3.53) 1.68 (-0.61, 3.97) 0.74 (-1.60, 3.09) 1.41 (-0.77, 3.60)
── Snapshots ───────────────────────────────────────────────────────────────────
To review and process snapshots locally:
* Locate check directory.
* Copy 'tests/testthat/_snaps' to local package.
* Run `testthat::snapshot_accept()` to accept all changes.
* Run `testthat::snapshot_review()` to review all changes.
[ FAIL 1 | WARN 0 | SKIP 25 | PASS 840 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.1.6
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘ancova_combined.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘ancova_combined.Rmd’
--- re-building ‘auto_colwidths.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘auto_colwidths.Rmd’
--- re-building ‘junco.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘junco.Rmd’
--- re-building ‘standard_column_structures.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘standard_column_structures.Rmd’
--- re-building ‘table_and_listing_customizations.Rmd’ using rmarkdown
Quitting from table_and_listing_customizations.Rmd:1672-1682 [multiple_docs_table2_display]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `x[[3]]`:
! subscript out of bounds
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'table_and_listing_customizations.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘table_and_listing_customizations.Rmd’
SUMMARY: processing the following file failed:
‘table_and_listing_customizations.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64
Version: 0.1.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [169s/194s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> options(rgl.useNULL = TRUE)
> library(testthat)
> library(junco)
Loading required package: formatters
Attaching package: 'formatters'
The following object is masked from 'package:base':
%||%
Loading required package: rtables
Loading required package: magrittr
Attaching package: 'magrittr'
The following objects are masked from 'package:testthat':
equals, is_less_than, not
Attaching package: 'rtables'
The following object is masked from 'package:utils':
str
>
> test_check("junco")
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining with `by = join_by(USUBJID)`
Joining with `by = join_by(USUBJID, ARM)`
mmrm() registered as emmeans extension
none of the combination levels appeared in the colspan treatment map; adding them automatically.
none of the combination levels appeared in the colspan treatment map; adding them automatically.
none of the combination levels appeared in the colspan treatment map; adding them automatically.
[1] 84 84 67 84
Saving _problems/test-summarize_ancova-719.R
[ FAIL 1 | WARN 0 | SKIP 25 | PASS 840 ]
══ Skipped tests (25) ══════════════════════════════════════════════════════════
• On CRAN (25): 'test-a_summarize_aval_chg_diff.R:472:1', 'test-ancova.R:4:1',
'test-docx_exporter_functions.R:9:1', 'test-estimate_proportion_diff.R:1:1',
'test-lsmeans.R:318:1', 'test-lsmeans.R:339:1', 'test-lsmeans.R:348:1',
'test-lsmeans.R:359:1', 'test-lsmeans.R:631:1', 'test-lsmeans.R:658:1',
'test-mmrm.R:81:1', 'test-mmrm.R:151:1', 'test-mmrm_rbmi.R:5:1',
'test-rbmi.R:73:3', 'test-rbmi.R:79:3', 'test-rbmi.R:120:3',
'test-rbmi.R:139:3', 'test-rbmi.R:152:3', 'test-rbmi.R:171:3',
'test-summarize_ancova.R:152:1', 'test-summarize_mmrm.R:15:1',
'test-summarize_mmrm.R:33:1', 'test-summarize_mmrm.R:70:1',
'test-tabulate_lsmeans.R:40:1', 'test-tt_to_tblfile.R:193:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-summarize_ancova.R:719:3'): a_summarize_ancova_j with multiple combined columns ──
Snapshot of code has changed:
old[5:10] vs new[5:10]
(N=86) (N=96) (N=86) (N=72) (N=182) (N=158) (N=254)
———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————
Adjusted comparison (covariates SEX)
- n 83 94 83 72 177 155 249
+ n 83 94 84 72 178 156 250
- Adjusted Mean (95% CI) -2.62 (-4.43, -0.81) -0.11 (-1.81, 1.59) -0.75 (-2.56, 1.06) -1.91 (-3.86, 0.04) -0.41 (-1.65, 0.83) -1.29 (-2.61, 0.04) -0.84 (-1.89, 0.20)
+ Adjusted Mean (95% CI) -2.63 (-4.43, -0.83) -0.11 (-1.80, 1.58) -1.67 (-3.46, 0.12) -1.90 (-3.84, 0.03) -0.84 (-2.07, 0.38) -1.78 (-3.09, -0.46) -1.15 (-2.19, -0.11)
- Difference in Adjusted Means (95% CI) 2.52 (0.03, 5.00) 1.87 (-0.69, 4.43) 0.71 (-1.95, 3.37) 2.21 (0.02, 4.41) 1.33 (-0.91, 3.58) 1.78 (-0.31, 3.87)
+ Difference in Adjusted Means (95% CI) 2.52 (0.05, 4.99) 0.96 (-1.58, 3.49) 0.73 (-1.92, 3.37) 1.78 (-0.40, 3.96) 0.85 (-1.38, 3.08) 1.48 (-0.60, 3.56)
── Snapshots ───────────────────────────────────────────────────────────────────
To review and process snapshots locally:
* Locate check directory.
* Copy 'tests/testthat/_snaps' to local package.
* Run `testthat::snapshot_accept()` to accept all changes.
* Run `testthat::snapshot_review()` to review all changes.
[ FAIL 1 | WARN 0 | SKIP 25 | PASS 840 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [177s/190s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> options(rgl.useNULL = TRUE)
> library(testthat)
> library(junco)
Loading required package: formatters
Attaching package: 'formatters'
The following object is masked from 'package:base':
%||%
Loading required package: rtables
Loading required package: magrittr
Attaching package: 'magrittr'
The following objects are masked from 'package:testthat':
equals, is_less_than, not
Attaching package: 'rtables'
The following object is masked from 'package:utils':
str
>
> test_check("junco")
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining with `by = join_by(USUBJID)`
Joining with `by = join_by(USUBJID, ARM)`
mmrm() registered as emmeans extension
none of the combination levels appeared in the colspan treatment map; adding them automatically.
none of the combination levels appeared in the colspan treatment map; adding them automatically.
none of the combination levels appeared in the colspan treatment map; adding them automatically.
[1] 84 84 67 84
Saving _problems/test-summarize_ancova-719.R
[ FAIL 1 | WARN 0 | SKIP 25 | PASS 840 ]
══ Skipped tests (25) ══════════════════════════════════════════════════════════
• On CRAN (25): 'test-a_summarize_aval_chg_diff.R:472:1', 'test-ancova.R:4:1',
'test-docx_exporter_functions.R:9:1', 'test-estimate_proportion_diff.R:1:1',
'test-lsmeans.R:318:1', 'test-lsmeans.R:339:1', 'test-lsmeans.R:348:1',
'test-lsmeans.R:359:1', 'test-lsmeans.R:631:1', 'test-lsmeans.R:658:1',
'test-mmrm.R:81:1', 'test-mmrm.R:151:1', 'test-mmrm_rbmi.R:5:1',
'test-rbmi.R:73:3', 'test-rbmi.R:79:3', 'test-rbmi.R:120:3',
'test-rbmi.R:139:3', 'test-rbmi.R:152:3', 'test-rbmi.R:171:3',
'test-summarize_ancova.R:152:1', 'test-summarize_mmrm.R:15:1',
'test-summarize_mmrm.R:33:1', 'test-summarize_mmrm.R:70:1',
'test-tabulate_lsmeans.R:40:1', 'test-tt_to_tblfile.R:193:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-summarize_ancova.R:719:3'): a_summarize_ancova_j with multiple combined columns ──
Snapshot of code has changed:
old[5:10] vs new[5:10]
(N=86) (N=96) (N=86) (N=72) (N=182) (N=158) (N=254)
———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————
Adjusted comparison (covariates SEX)
- n 83 94 83 72 177 155 249
+ n 83 94 84 72 178 156 250
- Adjusted Mean (95% CI) -2.62 (-4.43, -0.81) -0.11 (-1.81, 1.59) -0.75 (-2.56, 1.06) -1.91 (-3.86, 0.04) -0.41 (-1.65, 0.83) -1.29 (-2.61, 0.04) -0.84 (-1.89, 0.20)
+ Adjusted Mean (95% CI) -2.63 (-4.43, -0.83) -0.11 (-1.80, 1.58) -1.67 (-3.46, 0.12) -1.90 (-3.84, 0.03) -0.84 (-2.07, 0.38) -1.78 (-3.09, -0.46) -1.15 (-2.19, -0.11)
- Difference in Adjusted Means (95% CI) 2.52 (0.03, 5.00) 1.87 (-0.69, 4.43) 0.71 (-1.95, 3.37) 2.21 (0.02, 4.41) 1.33 (-0.91, 3.58) 1.78 (-0.31, 3.87)
+ Difference in Adjusted Means (95% CI) 2.52 (0.05, 4.99) 0.96 (-1.58, 3.49) 0.73 (-1.92, 3.37) 1.78 (-0.40, 3.96) 0.85 (-1.38, 3.08) 1.48 (-0.60, 3.56)
── Snapshots ───────────────────────────────────────────────────────────────────
To review and process snapshots locally:
* Locate check directory.
* Copy 'tests/testthat/_snaps' to local package.
* Run `testthat::snapshot_accept()` to accept all changes.
* Run `testthat::snapshot_review()` to review all changes.
[ FAIL 1 | WARN 0 | SKIP 25 | PASS 840 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.6
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘ancova_combined.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘ancova_combined.Rmd’
--- re-building ‘auto_colwidths.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘auto_colwidths.Rmd’
--- re-building ‘junco.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘junco.Rmd’
--- re-building ‘standard_column_structures.Rmd’ using rmarkdown
[WARNING] Deprecated: --mathjax. Use --math-method=mathjax[:URL] instead.
--- finished re-building ‘standard_column_structures.Rmd’
--- re-building ‘table_and_listing_customizations.Rmd’ using rmarkdown
Quitting from table_and_listing_customizations.Rmd:1672-1682 [multiple_docs_table2_display]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `x[[3]]`:
! subscript out of bounds
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'table_and_listing_customizations.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘table_and_listing_customizations.Rmd’
SUMMARY: processing the following file failed:
‘table_and_listing_customizations.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [165s/174s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> options(rgl.useNULL = TRUE)
> library(testthat)
> library(junco)
Loading required package: formatters
Attaching package: 'formatters'
The following object is masked from 'package:base':
%||%
Loading required package: rtables
Loading required package: magrittr
Attaching package: 'magrittr'
The following objects are masked from 'package:testthat':
equals, is_less_than, not
Attaching package: 'rtables'
The following object is masked from 'package:utils':
str
>
> test_check("junco")
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining with `by = join_by(USUBJID)`
Saving _problems/test-a_freq_resp_var_j-308.R
Joining with `by = join_by(USUBJID, ARM)`
mmrm() registered as emmeans extension
none of the combination levels appeared in the colspan treatment map; adding them automatically.
none of the combination levels appeared in the colspan treatment map; adding them automatically.
none of the combination levels appeared in the colspan treatment map; adding them automatically.
Saving _problems/test-estimate_proportion_diff-64.R
[1] 84 84 67 84
Saving _problems/test-summarize_ancova-719.R
[ FAIL 3 | WARN 0 | SKIP 25 | PASS 838 ]
══ Skipped tests (25) ══════════════════════════════════════════════════════════
• On CRAN (25): 'test-a_summarize_aval_chg_diff.R:472:1', 'test-ancova.R:4:1',
'test-docx_exporter_functions.R:9:1', 'test-estimate_proportion_diff.R:1:1',
'test-lsmeans.R:318:1', 'test-lsmeans.R:339:1', 'test-lsmeans.R:348:1',
'test-lsmeans.R:359:1', 'test-lsmeans.R:631:1', 'test-lsmeans.R:658:1',
'test-mmrm.R:81:1', 'test-mmrm.R:151:1', 'test-mmrm_rbmi.R:5:1',
'test-rbmi.R:73:3', 'test-rbmi.R:79:3', 'test-rbmi.R:120:3',
'test-rbmi.R:139:3', 'test-rbmi.R:152:3', 'test-rbmi.R:171:3',
'test-summarize_ancova.R:152:1', 'test-summarize_mmrm.R:15:1',
'test-summarize_mmrm.R:33:1', 'test-summarize_mmrm.R:70:1',
'test-tabulate_lsmeans.R:40:1', 'test-tt_to_tblfile.R:193:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-a_freq_resp_var_j.R:308:3'): a_freq_resp_var_j in layout with relative risk column for combined facet ──
Error: Error applying analysis function (var - SEX): Assertion on 'variables' failed: Must be of type 'list' (or 'NULL'), not 'language'.
occured at (row) path: root
Backtrace:
▆
1. └─rtables::build_table(lyt, adsl, alt_counts_df = adsl) at test-a_freq_resp_var_j.R:308:3
2. └─base::lapply(...)
3. └─rtables (local) FUN(X[[i]], ...)
4. └─rtables:::recursive_applysplit(...)
5. ├─rtables:::.make_split_kids(...)
6. └─rtables:::.make_split_kids(...)
7. └─rtables (local) .local(spl, have_controws, make_lrow, ...)
8. └─rtables:::.make_analyzed_tab(...)
── Failure ('test-estimate_proportion_diff.R:64:3'): a_proportion_diff_j works as expected in a table layout ──
Snapshot of code has changed:
old vs new
Code
result
Output
- A B
+ A B
- —————————————————————————————————————————————
+ ———————————————————————————————————————————————————————————————————————————————————
- % Difference (90% CI) 2.0 (-15.6, 19.6)
+ Difference in Response rate (%) and 90% CI (Anderson-Hauck) 2.0 (-15.6, 19.6)
── Failure ('test-summarize_ancova.R:719:3'): a_summarize_ancova_j with multiple combined columns ──
Snapshot of code has changed:
old[5:10] vs new[5:10]
(N=86) (N=96) (N=86) (N=72) (N=182) (N=158) (N=254)
———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————
Adjusted comparison (covariates SEX)
- n 83 94 83 72 177 155 249
+ n 83 94 84 72 178 156 250
- Adjusted Mean (95% CI) -2.62 (-4.43, -0.81) -0.11 (-1.81, 1.59) -0.75 (-2.56, 1.06) -1.91 (-3.86, 0.04) -0.41 (-1.65, 0.83) -1.29 (-2.61, 0.04) -0.84 (-1.89, 0.20)
+ Adjusted Mean (95% CI) -2.63 (-4.43, -0.83) -0.11 (-1.80, 1.58) -1.67 (-3.46, 0.12) -1.90 (-3.84, 0.03) -0.84 (-2.07, 0.38) -1.78 (-3.09, -0.46) -1.15 (-2.19, -0.11)
- Difference in Adjusted Means (95% CI) 2.52 (0.03, 5.00) 1.87 (-0.69, 4.43) 0.71 (-1.95, 3.37) 2.21 (0.02, 4.41) 1.33 (-0.91, 3.58) 1.78 (-0.31, 3.87)
+ Difference in Adjusted Means (95% CI) 2.52 (0.05, 4.99) 0.96 (-1.58, 3.49) 0.73 (-1.92, 3.37) 1.78 (-0.40, 3.96) 0.85 (-1.38, 3.08) 1.48 (-0.60, 3.56)
── Snapshots ───────────────────────────────────────────────────────────────────
To review and process snapshots locally:
* Locate check directory.
* Copy 'tests/testthat/_snaps' to local package.
* Run `testthat::snapshot_accept()` to accept all changes.
* Run `testthat::snapshot_review()` to review all changes.
[ FAIL 3 | WARN 0 | SKIP 25 | PASS 838 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.1.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [269s/356s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> options(rgl.useNULL = TRUE)
> library(testthat)
> library(junco)
Loading required package: formatters
Attaching package: 'formatters'
The following object is masked from 'package:base':
%||%
Loading required package: rtables
Loading required package: magrittr
Attaching package: 'magrittr'
The following objects are masked from 'package:testthat':
equals, is_less_than, not
Attaching package: 'rtables'
The following object is masked from 'package:utils':
str
>
> test_check("junco")
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining with `by = join_by(USUBJID)`
Joining with `by = join_by(USUBJID, ARM)`
mmrm() registered as emmeans extension
none of the combination levels appeared in the colspan treatment map; adding them automatically.
none of the combination levels appeared in the colspan treatment map; adding them automatically.
none of the combination levels appeared in the colspan treatment map; adding them automatically.
[1] 84 84 67 84
Saving _problems/test-summarize_ancova-719.R
[ FAIL 1 | WARN 0 | SKIP 25 | PASS 840 ]
══ Skipped tests (25) ══════════════════════════════════════════════════════════
• On CRAN (25): 'test-a_summarize_aval_chg_diff.R:472:1', 'test-ancova.R:4:1',
'test-docx_exporter_functions.R:9:1', 'test-estimate_proportion_diff.R:1:1',
'test-lsmeans.R:318:1', 'test-lsmeans.R:339:1', 'test-lsmeans.R:348:1',
'test-lsmeans.R:359:1', 'test-lsmeans.R:631:1', 'test-lsmeans.R:658:1',
'test-mmrm.R:81:1', 'test-mmrm.R:151:1', 'test-mmrm_rbmi.R:5:1',
'test-rbmi.R:73:3', 'test-rbmi.R:79:3', 'test-rbmi.R:120:3',
'test-rbmi.R:139:3', 'test-rbmi.R:152:3', 'test-rbmi.R:171:3',
'test-summarize_ancova.R:152:1', 'test-summarize_mmrm.R:15:1',
'test-summarize_mmrm.R:33:1', 'test-summarize_mmrm.R:70:1',
'test-tabulate_lsmeans.R:40:1', 'test-tt_to_tblfile.R:193:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-summarize_ancova.R:719:3'): a_summarize_ancova_j with multiple combined columns ──
Snapshot of code has changed:
old[5:10] vs new[5:10]
(N=86) (N=96) (N=86) (N=72) (N=182) (N=158) (N=254)
———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————
Adjusted comparison (covariates SEX)
- n 83 94 83 72 177 155 249
+ n 83 94 84 72 178 156 250
- Adjusted Mean (95% CI) -2.62 (-4.43, -0.81) -0.11 (-1.81, 1.59) -0.75 (-2.56, 1.06) -1.91 (-3.86, 0.04) -0.41 (-1.65, 0.83) -1.29 (-2.61, 0.04) -0.84 (-1.89, 0.20)
+ Adjusted Mean (95% CI) -2.64 (-4.53, -0.74) -0.11 (-1.89, 1.67) -1.90 (-3.78, -0.02) -1.89 (-3.92, 0.15) -0.95 (-2.25, 0.34) -1.89 (-3.27, -0.51) -1.22 (-2.31, -0.13)
- Difference in Adjusted Means (95% CI) 2.52 (0.03, 5.00) 1.87 (-0.69, 4.43) 0.71 (-1.95, 3.37) 2.21 (0.02, 4.41) 1.33 (-0.91, 3.58) 1.78 (-0.31, 3.87)
+ Difference in Adjusted Means (95% CI) 2.53 (-0.07, 5.12) 0.74 (-1.93, 3.41) 0.75 (-2.04, 3.53) 1.68 (-0.61, 3.97) 0.74 (-1.60, 3.09) 1.41 (-0.77, 3.60)
── Snapshots ───────────────────────────────────────────────────────────────────
To review and process snapshots locally:
* Locate check directory.
* Copy 'tests/testthat/_snaps' to local package.
* Run `testthat::snapshot_accept()` to accept all changes.
* Run `testthat::snapshot_review()` to review all changes.
[ FAIL 1 | WARN 0 | SKIP 25 | PASS 840 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.1.6
Check: tests
Result: ERROR
Running 'testthat.R' [230s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> options(rgl.useNULL = TRUE)
> library(testthat)
> library(junco)
Loading required package: formatters
Attaching package: 'formatters'
The following object is masked from 'package:base':
%||%
Loading required package: rtables
Loading required package: magrittr
Attaching package: 'magrittr'
The following objects are masked from 'package:testthat':
equals, is_less_than, not
Attaching package: 'rtables'
The following object is masked from 'package:utils':
str
>
> test_check("junco")
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining with `by = join_by(USUBJID)`
Joining with `by = join_by(USUBJID, ARM)`
mmrm() registered as emmeans extension
none of the combination levels appeared in the colspan treatment map; adding them automatically.
none of the combination levels appeared in the colspan treatment map; adding them automatically.
none of the combination levels appeared in the colspan treatment map; adding them automatically.
[1] 84 84 67 84
Saving _problems/test-summarize_ancova-719.R
[ FAIL 1 | WARN 0 | SKIP 25 | PASS 840 ]
══ Skipped tests (25) ══════════════════════════════════════════════════════════
• On CRAN (25): 'test-a_summarize_aval_chg_diff.R:472:1', 'test-ancova.R:4:1',
'test-docx_exporter_functions.R:9:1', 'test-estimate_proportion_diff.R:1:1',
'test-lsmeans.R:318:1', 'test-lsmeans.R:339:1', 'test-lsmeans.R:348:1',
'test-lsmeans.R:359:1', 'test-lsmeans.R:631:1', 'test-lsmeans.R:658:1',
'test-mmrm.R:81:1', 'test-mmrm.R:151:1', 'test-mmrm_rbmi.R:5:1',
'test-rbmi.R:73:3', 'test-rbmi.R:79:3', 'test-rbmi.R:120:3',
'test-rbmi.R:139:3', 'test-rbmi.R:152:3', 'test-rbmi.R:171:3',
'test-summarize_ancova.R:152:1', 'test-summarize_mmrm.R:15:1',
'test-summarize_mmrm.R:33:1', 'test-summarize_mmrm.R:70:1',
'test-tabulate_lsmeans.R:40:1', 'test-tt_to_tblfile.R:193:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-summarize_ancova.R:719:3'): a_summarize_ancova_j with multiple combined columns ──
Snapshot of code has changed:
old[5:10] vs new[5:10]
(N=86) (N=96) (N=86) (N=72) (N=182) (N=158) (N=254)
———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————
Adjusted comparison (covariates SEX)
- n 83 94 83 72 177 155 249
+ n 83 94 84 72 178 156 250
- Adjusted Mean (95% CI) -2.62 (-4.43, -0.81) -0.11 (-1.81, 1.59) -0.75 (-2.56, 1.06) -1.91 (-3.86, 0.04) -0.41 (-1.65, 0.83) -1.29 (-2.61, 0.04) -0.84 (-1.89, 0.20)
+ Adjusted Mean (95% CI) -2.63 (-4.43, -0.83) -0.11 (-1.80, 1.58) -1.67 (-3.46, 0.12) -1.90 (-3.84, 0.03) -0.84 (-2.07, 0.38) -1.78 (-3.09, -0.46) -1.15 (-2.19, -0.11)
- Difference in Adjusted Means (95% CI) 2.52 (0.03, 5.00) 1.87 (-0.69, 4.43) 0.71 (-1.95, 3.37) 2.21 (0.02, 4.41) 1.33 (-0.91, 3.58) 1.78 (-0.31, 3.87)
+ Difference in Adjusted Means (95% CI) 2.52 (0.05, 4.99) 0.96 (-1.58, 3.49) 0.73 (-1.92, 3.37) 1.78 (-0.40, 3.96) 0.85 (-1.38, 3.08) 1.48 (-0.60, 3.56)
── Snapshots ───────────────────────────────────────────────────────────────────
To review and process snapshots locally:
* Locate check directory.
* Copy 'tests/testthat/_snaps' to local package.
* Run `testthat::snapshot_accept()` to accept all changes.
* Run `testthat::snapshot_review()` to review all changes.
[ FAIL 1 | WARN 0 | SKIP 25 | PASS 840 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.1.6
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'ancova_combined.Rmd' using rmarkdown
--- finished re-building 'ancova_combined.Rmd'
--- re-building 'auto_colwidths.Rmd' using rmarkdown
--- finished re-building 'auto_colwidths.Rmd'
--- re-building 'junco.Rmd' using rmarkdown
--- finished re-building 'junco.Rmd'
--- re-building 'standard_column_structures.Rmd' using rmarkdown
--- finished re-building 'standard_column_structures.Rmd'
--- re-building 'table_and_listing_customizations.Rmd' using rmarkdown
Quitting from table_and_listing_customizations.Rmd:1672-1682 [multiple_docs_table2_display]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `x[[3]]`:
! subscript out of bounds
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'table_and_listing_customizations.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building 'table_and_listing_customizations.Rmd'
SUMMARY: processing the following file failed:
'table_and_listing_customizations.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.1.6
Check: tests
Result: ERROR
Running 'testthat.R' [355s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> options(rgl.useNULL = TRUE)
> library(testthat)
> library(junco)
Loading required package: formatters
Attaching package: 'formatters'
The following object is masked from 'package:base':
%||%
Loading required package: rtables
Loading required package: magrittr
Attaching package: 'magrittr'
The following objects are masked from 'package:testthat':
equals, is_less_than, not
Attaching package: 'rtables'
The following object is masked from 'package:utils':
str
>
> test_check("junco")
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Joining with `by = join_by(USUBJID)`
Joining with `by = join_by(USUBJID, ARM)`
mmrm() registered as emmeans extension
none of the combination levels appeared in the colspan treatment map; adding them automatically.
none of the combination levels appeared in the colspan treatment map; adding them automatically.
none of the combination levels appeared in the colspan treatment map; adding them automatically.
[1] 84 84 67 84
Saving _problems/test-summarize_ancova-719.R
[ FAIL 1 | WARN 0 | SKIP 25 | PASS 840 ]
══ Skipped tests (25) ══════════════════════════════════════════════════════════
• On CRAN (25): 'test-a_summarize_aval_chg_diff.R:472:1', 'test-ancova.R:4:1',
'test-docx_exporter_functions.R:9:1', 'test-estimate_proportion_diff.R:1:1',
'test-lsmeans.R:318:1', 'test-lsmeans.R:339:1', 'test-lsmeans.R:348:1',
'test-lsmeans.R:359:1', 'test-lsmeans.R:631:1', 'test-lsmeans.R:658:1',
'test-mmrm.R:81:1', 'test-mmrm.R:151:1', 'test-mmrm_rbmi.R:5:1',
'test-rbmi.R:73:3', 'test-rbmi.R:79:3', 'test-rbmi.R:120:3',
'test-rbmi.R:139:3', 'test-rbmi.R:152:3', 'test-rbmi.R:171:3',
'test-summarize_ancova.R:152:1', 'test-summarize_mmrm.R:15:1',
'test-summarize_mmrm.R:33:1', 'test-summarize_mmrm.R:70:1',
'test-tabulate_lsmeans.R:40:1', 'test-tt_to_tblfile.R:193:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-summarize_ancova.R:719:3'): a_summarize_ancova_j with multiple combined columns ──
Snapshot of code has changed:
old[5:10] vs new[5:10]
(N=86) (N=96) (N=86) (N=72) (N=182) (N=158) (N=254)
———————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————————
Adjusted comparison (covariates SEX)
- n 83 94 83 72 177 155 249
+ n 83 94 84 72 178 156 250
- Adjusted Mean (95% CI) -2.62 (-4.43, -0.81) -0.11 (-1.81, 1.59) -0.75 (-2.56, 1.06) -1.91 (-3.86, 0.04) -0.41 (-1.65, 0.83) -1.29 (-2.61, 0.04) -0.84 (-1.89, 0.20)
+ Adjusted Mean (95% CI) -2.64 (-4.53, -0.74) -0.11 (-1.89, 1.67) -1.90 (-3.78, -0.02) -1.89 (-3.92, 0.15) -0.95 (-2.25, 0.34) -1.89 (-3.27, -0.51) -1.22 (-2.31, -0.13)
- Difference in Adjusted Means (95% CI) 2.52 (0.03, 5.00) 1.87 (-0.69, 4.43) 0.71 (-1.95, 3.37) 2.21 (0.02, 4.41) 1.33 (-0.91, 3.58) 1.78 (-0.31, 3.87)
+ Difference in Adjusted Means (95% CI) 2.53 (-0.07, 5.12) 0.74 (-1.93, 3.41) 0.75 (-2.04, 3.53) 1.68 (-0.61, 3.97) 0.74 (-1.60, 3.09) 1.41 (-0.77, 3.60)
── Snapshots ───────────────────────────────────────────────────────────────────
To review and process snapshots locally:
* Locate check directory.
* Copy 'tests/testthat/_snaps' to local package.
* Run `testthat::snapshot_accept()` to accept all changes.
* Run `testthat::snapshot_review()` to review all changes.
[ FAIL 1 | WARN 0 | SKIP 25 | PASS 840 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64