AMR: Antimicrobial Resistance Data Analysis

Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in <doi:10.18637/jss.v104.i03>.

Version: 3.0.1
Depends: R (≥ 3.0.0)
Suggests: cleaner, cli, crayon, curl, data.table, dplyr, ggplot2, knitr, openxlsx, parallelly, pillar, progress, readxl, recipes, rlang, rmarkdown, rstudioapi, rvest, skimr, testthat, tibble, tidymodels, tidyselect, tinytest, vctrs, xml2
Published: 2025-09-20
DOI: 10.32614/CRAN.package.AMR
Author: Matthijs S. Berends ORCID iD [aut, cre], Dennis Souverein ORCID iD [aut, ctb], Erwin E. A. Hassing [aut, ctb], Aislinn Cook ORCID iD [ctb], Andrew P. Norgan ORCID iD [ctb], Anita Williams ORCID iD [ctb], Annick Lenglet ORCID iD [ctb], Anthony Underwood ORCID iD [ctb], Anton Mymrikov [ctb], Bart C. Meijer [ctb], Christian F. Luz ORCID iD [ctb], Dmytro Mykhailenko [ctb], Eric H. L. C. M. Hazenberg [ctb], Gwen Knight ORCID iD [ctb], Jane Hawkey ORCID iD [ctb], Jason Stull ORCID iD [ctb], Javier Sanchez ORCID iD [ctb], Jonas Salm [ctb], Judith M. Fonville [ctb], Kathryn Holt ORCID iD [ctb], Larisse Bolton ORCID iD [ctb], Matthew Saab [ctb], Natacha Couto ORCID iD [ctb], Peter Dutey-Magni ORCID iD [ctb], Rogier P. Schade [ctb], Sofia Ny ORCID iD [ctb], Alex W. Friedrich ORCID iD [ths], Bhanu N. M. Sinha ORCID iD [ths], Casper J. Albers ORCID iD [ths], Corinna Glasner ORCID iD [ths]
Maintainer: Matthijs S. Berends <m.s.berends at umcg.nl>
BugReports: https://github.com/msberends/AMR/issues
License: GPL-2 | file LICENSE
URL: https://amr-for-r.org, https://github.com/msberends/AMR
NeedsCompilation: no
Citation: AMR citation info
Materials: README, NEWS
In views: Epidemiology
CRAN checks: AMR results

Documentation:

Reference manual: AMR.html , AMR.pdf
Vignettes: AMR for Python (source, R code)
Welcome to the 'AMR' package (source, R code)

Downloads:

Package source: AMR_3.0.1.tar.gz
Windows binaries: r-devel: AMR_3.0.1.zip, r-release: AMR_3.0.1.zip, r-oldrel: AMR_3.0.1.zip
macOS binaries: r-release (arm64): AMR_3.0.1.tgz, r-oldrel (arm64): AMR_3.0.1.tgz, r-release (x86_64): AMR_3.0.1.tgz, r-oldrel (x86_64): AMR_3.0.1.tgz
Old sources: AMR archive

Reverse dependencies:

Reverse imports: MIC, MIMER

Linking:

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