biclust: BiCluster Algorithms

The main function biclust() provides several algorithms to find biclusters in two-dimensional data: Cheng and Church (2000, ISBN:1-57735-115-0), spectral (2003) <doi:10.1101/gr.648603>, plaid model (2005) <doi:10.1016/j.csda.2004.02.003>, xmotifs (2003) <doi:10.1142/9789812776303_0008> and bimax (2006) <doi:10.1093/bioinformatics/btl060>. In addition, the package provides methods for data preprocessing (normalization and discretisation), visualisation, and validation of bicluster solutions.

Version:	2.0.3.1
Depends:	R (≥ 2.10), MASS, grid, colorspace, lattice
Imports:	methods, flexclust, additivityTests, tidyr, ggplot2
Suggests:	isa2
Published:	2023-05-19
DOI:	10.32614/CRAN.package.biclust
Author:	Sebastian Kaiser, Rodrigo Santamaria, Tatsiana Khamiakova, Martin Sill, Roberto Theron, Luis Quintales, Friedrich Leisch, Ewoud De Troyer and Sami Leon.
Maintainer:	Sebastian Kaiser <dr.sebastian.kaiser at gmail.com>
License:	GPL-3
NeedsCompilation:	yes
Materials:	NEWS
In views:	Cluster
CRAN checks:	biclust results [issues need fixing before 2025-11-15]

Documentation:

Reference manual:

biclust.html , biclust.pdf

Downloads:

Package source:	biclust_2.0.3.1.tar.gz
Windows binaries:	r-devel: biclust_2.0.3.1.zip, r-release: biclust_2.0.3.1.zip, r-oldrel: biclust_2.0.3.1.zip
macOS binaries:	r-release (arm64): biclust_2.0.3.1.tgz, r-oldrel (arm64): biclust_2.0.3.1.tgz, r-release (x86_64): biclust_2.0.3.1.tgz, r-oldrel (x86_64): biclust_2.0.3.1.tgz
Old sources:	biclust archive

Reverse dependencies:

Reverse depends:	iBBiG, QUBIC, runibic, superbiclust
Reverse imports:	Anthropometry, BiBitR, miRSM, mosbi, rqubic, sigQC
Reverse suggests:	BcDiag, isa2, rattle

Linking:

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