To cite phylter in publications use:

Comte A, Tricou T, Tannier E, Joseph J, Siberchicot A, Penel S, Allio R, Delsuc F, Dray S, de Vienne D (2023). “PhylteR: Efficient Identification of Outlier Sequences in Phylogenomic Datasets.” Molecular Biology and Evolution, 40(11), msad234. doi:10.1093/molbev/msad234.

Corresponding BibTeX entry:

  @Article{,
    title = {{PhylteR}: Efficient Identification of Outlier Sequences
      in Phylogenomic Datasets},
    author = {Aurore Comte and Th\'eo Tricou and Eric Tannier and
      Julien Joseph and Aur\'elie Siberchicot and Simon Penel and
      R\'emi Allio and Fr\'ed\'eric Delsuc and St\'ephane Dray and
      Damien M {de Vienne}},
    journal = {Molecular Biology and Evolution},
    volume = {40},
    number = {11},
    pages = {msad234},
    year = {2023},
    month = {10},
    doi = {10.1093/molbev/msad234},
  }