[BioC] More plot woes (maRawPlots)

[Peter Baker (CMIS, Indooroopilly)]

Re: 
> > > maDiagnPlots1(test[,2])
> > Error in plot.new() : Figure margins too large

Thanks to Robert Gentleman, Joshua Betcher and Sandrine Dudoit for
responding. 

I changed graphics window sizes and output the graphs to files to work
around the problem. I also tried to debug the functions to track down
exactly where the error is but no luck really - sorry.

Next I tried an overall loess normalisation on housekeeping genes
exp48.norm<-maNorm(exp48, norm="loess", subset=(housekeep ==1))  

and while maPlot(), maDiagnPlots1(), maNormPlots(), work fine (if I'm
careful about graphics window sizes), maRawPlots() doesn't

> maDiagnPlots1(exp48[,1],fname="test1.ps",dev="postscript",save=T)
postscript 
         2 
> maNormPlots(exp48.norm[,1],fname="test2.ps",dev="postscript",save=T)
postscript 
         2 
> maRawPlots(exp48[,1],fname="test3.ps",dev="postscript",save=T)
Error in factor(z, levels = 1:nlevels(x), labels = levels(x)) : 
	invalid labels; length 0 should be 1 or 2
> 

Is this a similar error? It sort of looks like it because the boxplot
where it stops has no margins

Thanks a lot

Regards
Peter

-- 
Dr Peter Baker, Statistician (Bioinformatics/Genetics),
CSIRO Mathematical & Information Sciences,
120 Meiers Rd, INDOOROOPILLY, QLD 4068.  Australia. 
Email: <Peter.Baker@csiro.au>
WWW: http://www.cmis.csiro.au/Peter.Baker/
Phone:+61 7 3214 2210   Fax:+61 7 3214 2881