[BioC] Loading affy library

James W Mac Donald jmacdon@umich.edu
Tue, 4 Jun 2002 13:41:26 -0400 (EDT)


I am using R 1.5, and I updated all of the librarys to make sure it wasn't
simply an outdated library. In addition I made sure that I have everything
set up so tcltk will load correctly (I assume I need tcltk in order to use
tkWidgets).

Thanks,

Jim

James W. MacDonald
UMCCC Microarray Core Facility
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623


On 4 Jun 2002, A.J. Rossini wrote:

> >>>>> "james" == James W Mac Donald <James> writes:
>
>     james> Hi all,
>     james> I am having a problem loading the affy library into R. Here is the message
>     james> I get:
>
>     james> library(affy)
>     james> Loading required package: Biobase
>     james> Loading required package: methods
>     james> Expanding the signature to include omitted arguments
>     james> in definition: j = "missing"
>     james> Loading required package: eda
>     james> Error in setGeneric("length", where = where) :
>     james>         "length" is a primitive function; methods can be defined for some
>     james> of these but setGeneric must not be called
>     james> Error in library(affy) : .First.lib failed
>
>     james> Any ideas?
>
> You should be using R 1.5; are you?  (the "methods" error suggests not?)
>
> best,
> -tony
>
> --
> A.J. Rossini				Rsrch. Asst. Prof. of Biostatistics
> U. of Washington Biostatistics		rossini@u.washington.edu
> FHCRC/SCHARP/HIV Vaccine Trials Net	rossini@scharp.org
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>