[BioC] Still not working masking of features

Isaac Neuhaus isaac.neuhaus@bms.com
Wed, 19 Jun 2002 16:26:21 -0400


The funtion read.celfile is still giving me grief in version 1.1.1 this
is what I get. (Just a as a remainder some probe sets have all of their
features masked).

> cels<-list()
> cels[1]<-"cw20001050101a.cel"
> cels[2]<-"cw20001050102a.cel"
> cels[3]<-"cw20001050103a.cel"
> cels[4]<-"cw20001050104a.cel"
> cels[5]<-"cw20001050105a.cel"
> cels[6]<-"cw20001050106a.cel"
> names<-list()
> names[1]<-"CW20001050101A"
> names[2]<-"CW20001050102A"
> names[3]<-"CW20001050103A"
> names[4]<-"CW20001050104A"
> names[5]<-"CW20001050105A"
> names[6]<-"CW20001050106A"
> data <- ReadAffy(CDFfile="HG_U95Av2.CDF", CELfiles=cels,
chip.names=names, rm.mask=T, verbose=F)
Error in read.celfile(CELfiles[i], compress = compress.cel, sd = FALSE,
:
        subscript out of bounds
Execution halted

Isaac