[BioC] Problems Getting Started
Ann Hess
hess at stat.colostate.edu
Thu Apr 10 11:51:35 MEST 2003
I am trying to get started with BioConductor. I installed BioConductor
using the installation script getBioC.R (following the instructions given
on the website).
Everything seemed to install OK, but when I used the command:
"Data<-ReadAffy(widget=TRUE)"
I get the following error:
Loading required package: tkWidgets
Loading required package: widgetTools
Error in firstlib(which.lib.loc, package) :
TCL_LIBRARY is not set
Error in firstlib(which.lib.loc, package) :
Package tcltk unavailable!
Error in eval(expr, envir, enclos) : Package widgetTools unavailable
I downloaded widgetTools into my working directory, but when I tried the
command:
"library(widgetTools)"
I get the following error:
Error in firstlib(which.lib.loc, package) :
TCL_LIBRARY is not set
Error in firstlib(which.lib.loc, package) :
Package tcltk unavailable!
Error in library(widgetTools) : .First.lib failed
Note that the command:
"Data<-ReadAffy()",
seems to work OK,
but the command
"eset<-rma(Data)"
gives me an error about the cdf files which I have downloaded into my
working directory.
Any suggestions would be appreciated.
Thanks!
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