[BioC] invarianset problem
Tibor van Rooij
Tibor van Rooij" <tibor@cs.mcgill.ca
Mon, 13 Jan 2003 15:34:27 -0500
When testing the invarianset method on the example as mentioned in the manual:
eset <- expresso(affybatch.example, normalize.method="invariantset",bg.correct=FALSE,pmcorrect.method="pmonly",summary.method="liwong")
I get the following error:
......Error in quantile.default(sigma.theta, normal.array.quantile) :
Missing values and NaN's not allowed if `na.rm' is FALSE
In addition: Warning messages:
1: No convergence achieved, too many outliers in: fit.li.wong(probes, ...)
2: No convergence achieved, too many outliers in: fit.li.wong(probes, ...)
3: No convergence achieved, too many outliers in: fit.li.wong(probes, ...)
4: No convergence achieved, too many outliers in: fit.li.wong(probes, ...)
5: No convergence achieved in outlier loop
in: fit.li.wong(probes, ...)
Error in name.levels(cdf) : Object "cdf" not found
Tibor
_____________________________________
Tibor van Rooij
Bioinformatician
McGill & Genome Quebec Innovation Centre
McGill University Campus
Tel: (514) 398-2497
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