[BioC] AnnBuilder script buildDPkg.R

John Zhang John Zhang <jzhang@jimmy.harvard.edu>
Tue, 21 Jan 2003 13:00:48 -0500 (EST)


I will try to update the chip today or tomorrow and will let you know what the 
problem might be.

Jianhua
 
>From: Reinhold Koch <reinhold.koch@unibas.ch>
>To: bioconductor <bioconductor@stat.math.ethz.ch>
>MIME-version: 1.0
>Content-transfer-encoding: 7bit
>X-Virus-Scanned: by amavisd-milter (http://amavis.org/)
>X-Virus-Scanned: by amavisd-milter (http://amavis.org/)
>X-Spam-Status: No, hits=0.5 required=5.0 
tests=SPAM_PHRASE_00_01,TO_LOCALPART_EQ_REAL version=2.43
>X-Spam-Level: 
>Subject: [BioC] AnnBuilder script buildDPkg.R
>X-BeenThere: bioconductor@stat.math.ethz.ch
>X-Mailman-Version: 2.0.13
>List-Help: <mailto:bioconductor-request@stat.math.ethz.ch?subject=help>
>List-Post: <mailto:bioconductor@stat.math.ethz.ch>
>List-Subscribe: <http://www.stat.math.ethz.ch/mailman/listinfo/bioconductor>, 
<mailto:bioconductor-request@stat.math.ethz.ch?subject=subscribe>
>List-Id: The Bioconductor Project Mailing List <bioconductor.stat.math.ethz.ch>
>List-Unsubscribe: <http://www.stat.math.ethz.ch/mailman/listinfo/bioconductor>, 
<mailto:bioconductor-request@stat.math.ethz.ch?subject=unsubscribe>
>List-Archive: <http://www.stat.math.ethz.ch/pipermail/bioconductor/>
>Date: Tue, 21 Jan 2003 17:08:52 +0100
>
>Hello,
>
>I tried to update the annotations for Affymetrix' rgu34a chip using the
>buildDPkg.R. After some modifications I get as far as the flat file
>"rgu34aLL", but then fileToXML bails out with 
>
>"Error in lapply(fileRead[, i], doMultValue, multSep, i) :
>        subscript out of bounds
>Execution halted"
>
>Has anybody a version around that performs better?
>
>Cheers
>Reinhold Koch
>
>_______________________________________________
>Bioconductor mailing list
>Bioconductor@stat.math.ethz.ch
>http://www.stat.math.ethz.ch/mailman/listinfo/bioconductor