[BioC] Recent changes to Bioconductor packages

[madman at jimmy.harvard.edu]

This is an automated message sent out weekly to report recent changes
to Bioconductor packages.  Please see the URL 
http://www.bioconductor.org/changelog.html for a complete history of 
changes.  Unless otherwise noted, these changes apply to the developmental
packages only.
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June 20, 2003: Biobase/reposTools - Converted both packages to use the
     install.R mechanism for installation.  This should result in much
     faster startup times when loading these packages. JG

June 20, 2003: reposTools - fixed a small bug in the splitDFstrings 
     man page which was causing problems on examples in R-devel. JG

June 19, 2003: limma - version 1.1.2 - bug fixes to classifyTests,
     normalizeForPrintorder (no longer generic) and plotPrintorder.
	 ClassifyTests now accepts design and contrast matrices.  GKS

June 18, 2003: reposTools - added a 'BIOCcdf' repository alias. JG

June 18, 2003: getBioC - the default for the getAllDeps parameter is now
     TRUE.  JG

June 15, 2003: limma - version 1.1.1 - new functions for Kooperberg Bayesian
     background correction.  modreg now required for R earlier than 1.7.0.
     normalizeWithinArrays no longer generic to simplify documentation.
     Documentation for normalizeBetweenArrays also consolidated.
	 New virtual class LargeDataObject and associated show method.