[BioC] the result of bioconductor not agree with MAS
Ben Bolstad
bolstad at stat.berkeley.edu
Mon Mar 10 10:22:15 MET 2003
> If I read the code in pmcorrect.mas() correctly (affy version 1.1),
> the mismatch is not subtracted from the perfect match, so the line
>
> pm.corrected <- apply(cbind(pps.pm, pps.im, delta), 1, max)
>
> should IMHO rather read
>
> pm.corrected <- apply(cbind(pps.pm-pps.mm, pps.im-pps.mm, delta), 1,
> max) ?
>
> I might very well be missing something, so if somebody could give
> me a clue I'd be grateful.
This issue was corrected a long time ago, I believe the release version
1.1.1 of affy had the fix.
Ben
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