[BioC] How to use Rcmd

[A.J. Rossini]

Rcmd.exe should be in the same directory as Rterm.exe and Rgui.exe,
i.e. the "bin" directory under where you installed R.


"Zhao, Po" <PZhao at cnmcresearch.org> writes:

> Thanks for your email.
>
> If I just enter "Rterm.exe", a R session will start with R prompt.
>
> If I enter "Rterm.exe --no-restore --no-save < %1 > %1.out", shown is:
>
> D:\Program Files\Rma\bin>Rterm.exe --no-restore --no-save < %1 > %1.out
> The system cannot find the file specified.
>
> Where can I download Rcmd program?
>
> Thanks.
>
> Po
>
> -----Original Message-----
> From: Wolfgang Huber [mailto:whuber at jimmy.harvard.edu]
> Sent: Monday, March 10, 2003 3:14 PM
> To: Zhao, Po
> Cc: bioconductor at stat.math.ethz.ch
> Subject: Re: [BioC] How to use Rcmd
>
>
>
> Hi Po,
>
> do you have the program "rcmd" on your computer? Probably not - normally
> you have to get it separately. Here, from the Windows FAQ, how you can 
> also run R in batch mode with rterm.exe:
>
>
>
> 2.9 Can I use R BATCH?
>
> Yes, if you have Perl and the files for making source packages (from
> rw1062.exe) installed. The Windows
> analogue is Rcmd BATCH: use Rcmd BATCH --help for full details.
>
> Otherwise you can set up a batch file using Rterm.exe. A sample batch file
> might contain (as one line)
>
>      path_to_R\bin\Rterm.exe --no-restore --no-save < %1 > %1.out
>
>
> Best - 
> ----------------------------------------
> Wolfgang Huber
> Division of Molecular Genome Analysis
> German Cancer Research Center
> Heidelberg, Germany
> ----------------------------------------
>
>
> On Mon, 10 Mar 2003, Zhao, Po wrote:
>
>> Hi,
>> 
>> I am using Windows NT, R 1.6.2. I try to use command "Rcmd" in my DOS
>> window, but when I typed in "Rcmd BATCH" in the "bin" directory of R, it
> can
>> not be recognized. Showing is:
>> 
>> D:\Program Files\Rma\bin>Rcmd BATCH
>> The name specified is not recognized as an
>> internal or external command, operable program or batch file.
>> 
>> How should I use Rcmd command? Thanks.
>>
>
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>

-- 
A.J. Rossini				Rsrch. Asst. Prof. of Biostatistics
U. of Washington Biostatistics		rossini at u.washington.edu	
FHCRC/SCHARP/HIV Vaccine Trials Net	rossini at scharp.org
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