[BioC] inconsistent annotation between "getGO()" and "getGO()"

[John Zhang]

>I got a GO_ID, such as "GO:0042989" from the commend below:
>> gg <- getGO(rownames(data.dat), data="YEAST")

What are the values for rownames(data.dat)? We can not test the code if you do 
not tell us what rownames(data.dat) were.


>
>However, the GO_ID cannot be matched by AmiGo database.
>http://www.godatabase.org/cgi-bin/go.cgi?query=GO%3A0042989&view=query&sessi
>on_id=93871069092363&action=query&search_constraint=terms
>
>As a result, I got an error massage here,
>> get("GO:0042989", env = GOCATEGORY)
>> Error in get(x, envir, mode, inherits) : variable "GO:0042989" was not
>found
>
>How can I avoid this inconsistent annotation between "getGO()" and
>"getGO()"?
>
>Thank you for the help.
>
>Shih-Te
>------------------------------------------------
>Shih-Te Yang, Ph.D. student
>Bioinformatics Research Center
>Institute of Biochemistry
>School of Life Science
>National Yang-Ming University
>Tel:+886-2-28267000*5666
>Fax:+886-2-81461062
>E-mail:g38903040 at ym.edu.tw
>MyWeb: http://binfo.ym.edu.tw/styang/
>
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Jianhua Zhang
Department of Biostatistics
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084