[BioC] inconsistent annotation between "getGO()" and "getGO()"

John Zhang jzhang at jimmy.harvard.edu
Mon Nov 17 20:21:41 MET 2003

>I got a GO_ID, such as "GO:0042989" from the commend below:
>> gg <- getGO(rownames(data.dat), data="YEAST")

What are the values for rownames(data.dat)? We can not test the code if you do 
not tell us what rownames(data.dat) were.

>However, the GO_ID cannot be matched by AmiGo database.
>As a result, I got an error massage here,
>> get("GO:0042989", env = GOCATEGORY)
>> Error in get(x, envir, mode, inherits) : variable "GO:0042989" was not
>How can I avoid this inconsistent annotation between "getGO()" and
>Thank you for the help.
>Shih-Te Yang, Ph.D. student
>Bioinformatics Research Center
>Institute of Biochemistry
>School of Life Science
>National Yang-Ming University
>E-mail:g38903040 at ym.edu.tw
>MyWeb: http://binfo.ym.edu.tw/styang/
>Bioconductor mailing list
>Bioconductor at stat.math.ethz.ch

Jianhua Zhang
Department of Biostatistics
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084

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