[BioC] "Rgraphviz" installation problem

[Martin Maechler]

>>>>> "Weiming" == Weiming Zhang <Weiming.Zhang at uchsc.edu>
>>>>>     on 07 Oct 2003 10:52:06 -0600 writes:

    Weiming> Hi,
    Weiming> Problem solved. I changed linux kernel-headers from 2.4.20 to 2.4.9 and
    Weiming> it worked.

    Weiming> Thank you all for the help, especially Robert.

Interesting.... but  quite problematic, since 2.4.20 is not a beta Linux kernel
but a "production" one, and a very widely used one too:
Redhat 9's kernel (at least here) *is* 2.4.20.

So I assume the graphviz need to be
notified about this as well, right?

Martin

    Weiming> On Mon, 2003-10-06 at 20:21, Vincent Carey 525-2265 wrote:
    >> >                  from common.h:10,
    >> >                  from Rgraphviz.c:1:
    >> > /usr/include/bits/local_lim.h:36:26: linux/limits.h: No such file or
    >> > directory
    >> > In file included from Rgraphviz.c:1:
    >> > common.h:19:20: render.h: No such file or directory
    >> > common.h:20:19: graph.h: No such file or directory
    >> > common.h:21:22: dotprocs.h: No such file or directory
    >> > common.h:22:24: neatoprocs.h: No such file or directory
    >> > common.h:23:20: adjust.h: No such file or directory
    >> > Rgraphviz.c:2:20: circle.h: No such file or directory
    >> 
    >> these errors suggest that the graphviz installation from
    >> RPM is not supporting development level resources.
    >> 
    >> > -IboostIncl -ftemplate-depth-30 -fPIC  -g -O2 -c bfsBGL.cpp -o bfsBGL.o
    >> > In file included from /usr/include/bits/posix1_lim.h:126,
    >> >                  from /usr/include/limits.h:144,
    >> >                  from
    >> > /usr/lib/gcc-lib/i386-redhat-linux/2.96/include/limits.h:130,
    >> >                  from
    >> > /usr/lib/gcc-lib/i386-redhat-linux/2.96/include/syslimits.h:7,
    >> >                  from
    >> > /usr/lib/gcc-lib/i386-redhat-linux/2.96/include/limits.h:11,
    >> >                  from boostIncl/boost/config/suffix.hpp:26,
    >> >                  from boostIncl/boost/config.hpp:57,
    >> >                  from RBGL.h:4,
    >> >                  from bfsBGL.cpp:5:
    >> > /usr/include/bits/local_lim.h:36:26: linux/limits.h: No such file or
    >> 
    >> these errors suggest inadequacy of your linux installation.
    >> the missing files are basic development resources.  you may
    >> have chosen an "end-user-only" distribution, or the linux
    >> installation is nonstandard.
    >> 
    >> are you able to build R from source?  i suspect not.
    >>