[BioC] Limma & Imagene

[Marcelo Luiz de Laia]

Hi,

Your steps are:

library(limma)
>
YourSample<-read.table("TargetsSampleTarget.txt",header=TRUE,sep="\t",as.is=
TRUE)
> slides<-cbind(YourSample$FileNameCy3, YourSample$FileNameCy5)
> RG<-read.maimages(slides, source="imagene")

.
.
.

Marcelo


> > library(limma)
> >
>
> > YourSample
>   SlideNumber FileNameCy3 FileNameCy5     Cy3       Cy5
> 1           1       1.txt       2.txt treated untreated
> 2           2       3.txt       4.txt treated untreated
> 3           3       5.txt       6.txt treated untreated
> > RG<-read.maimages(slides, source="imagene")
> Error in match.arg(source, c("spot", "spot.close.open", "genepix",
> "quantarray")) :
>         ARG should be one of spot, spot.close.open, genepix, quantarray
>
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