[BioC] Allocation error

[James MacDonald]

Yep, that's a memory problem. If you are running under Windows, you can
make sure that you have enough memory allocated to R by using the
command line flag --max-mem-size=1G (substituting the correct amount of
RAM). If you have already allocated all your memory, then you have to
get some more RAM.

Regards,

Jim



James W. MacDonald
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623

>>> Ann Hess <hess at stat.colostate.edu> 09/28/03 10:17PM >>>
I am receiving an allocation error while using different expression
calls
(MAS5 and LiWong).  This is happening during varying runs of a
simulation.
The actual errors are shown below.

I'm not sure if this is a memory problem (I should have plenty of
memory)
or a BioConductor problem.

Any suggestions?  Thanks!

#During MAS
background correction: mas
PM/MM correction : mas
expression values: mas
background correcting...Error: cannot allocate vector of size 32000 Kb

#During LiWong
normalization: invariantset
PM/MM correction : pmonly
expression values: liwong
normalizing...Error: cannot allocate vector of size 32000 Kb

_______________________________________________
Bioconductor mailing list
Bioconductor at stat.math.ethz.ch 
https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor