[BioC] limma and nested factors

Stephen Henderson s.henderson at ucl.ac.uk
Thu Apr 8 15:05:53 CEST 2004

how about the rank spearman correlation of all the toptable p-values?

>There seems nothing wrong with your limma analysis. Focusing only on the
>most extreme differentially expressed genes as you do with a toptable will 
>of course exaggerate the differences between the three labs.

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