[BioC] Problem installing Rgraphviz

Kasper Daniel Hansen k.hansen at biostat.ku.dk
Wed Apr 14 17:05:25 CEST 2004


On Wed, Apr 14, 2004 at 10:09:45AM +0800, Nicholas Lewin-Koh wrote:
> I looked at the source code and I couldn't find Info declared anywhere
> including the graphviz or R headers, I
> thought it might be a global variable. Is this an oversight in the
> development version or something
> I forgot to configure on my system. I am using a fresh install of R-1.9.0
> on RH linux 9.0 and I have graphviz-1.12
> and Rgraphviz_1.3.22

It seems there are problems finding the graphviz headers. This will 
depend on how you installed the graphviz package and how your system 
looks through libraries.

A quick fix is to use the environment variable LD_LIBRARY_PATH to set 
the library path. Try something like
  # export LD_LIBRARY_PATH=/usr/lib/graphviz
with the exact path depending on your graphviz install. This is followed 
by installing Rgraphviz from the same shell.
-- 
Kasper Daniel Hansen, Research Assistant
Department of Biostatistics, University of Copenhagen



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