[BioC] GO annotation problem

Mayte Suarez-Farinas mayte at babel.rockefeller.edu
Thu Apr 22 21:56:05 CEST 2004



Hi,

I have been using Annotations tools without problems but I just realized 
some days ago that my HTML outputs have the GO column empty. I reinstalled 
both devel and release version of Annotations (libName=Annotation) and it 
happend with both. Here is the code, for example: 

library(annaffy)
library(affy)
load('mydata')
anncols<-aaf.handler()[c(1:4,7:8, 12:13)]
anntable<-aafTableAnn(geneNames(mydata.gcrma)[1:100],'hgu133a',anncols)
saveHTML(anntable[1:100],'lixo.html')

Does somebody have any idea what it is going on ? Please!

platform i686-pc-linux-gnu
arch     i686
os       linux-gnu
system   i686, linux-gnu
status   beta
major    1
minor    9.0
year     2004
month    03
day      22
language R


-- 
Mayte Suarez Farinas
The Rockefeller University
1230 York Avenue, Box 212
New York, NY 10021
phone: 1-212-327-8186
fax:   1-212-327-7422



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