[BioC] venn diagram in R

Aedin aedin.culhane at ucd.ie
Wed Apr 28 10:15:29 CEST 2004


Dear Anthony,
I think Arne's code will give you a dendrogram. I am not sure what you mean
of text strings. Limma has a venn diagram module.

library(limma)
example(vennDiagram)

Also I came across another posting on the R newsgroup,
http://maths.newcastle.edu.au/~rking/R/help/03a/1115.html which gave code
for creating Venn diagrams from TRUE/FALSE lists.

Hope one of these help,
Aedin Culhane


-----Original Message-----
From: bioconductor-bounces at stat.math.ethz.ch
[mailto:bioconductor-bounces at stat.math.ethz.ch]On Behalf Of
Arne.Muller at aventis.com
Sent: 28 April 2004 09:00
To: bioconductor at stat.math.ethz.ch; anthonyb at ichr.uwa.edu.au
Subject: RE: [BioC] venn diagram in R


What do you mean by "text strings", the leafs of the diagram labeled with
text strings?

you need to use library(cluster)

d <- dist(intensity.matrix)
plot(hclust(d), hang=-0.5)

The colum names of your intensity.matrix will be used for lables.
intensity.matrix is a matrix returned by exprs(eset).

	regards,

	Arne

--
Arne Muller, Ph.D.
Toxicogenomics, Aventis Pharma
arne dot muller domain=aventis com

> -----Original Message-----
> From: bioconductor-bounces at stat.math.ethz.ch
> [mailto:bioconductor-bounces at stat.math.ethz.ch]On Behalf Of Anthony
> Bosco
> Sent: 28 April 2004 03:57
> To: bioconductor at stat.math.ethz.ch
> Subject: [BioC] venn diagram in R
>
>
> Hi,
>
> could someone tell me how to plot a venn diagram in R of text strings.
>
>
> Regards
>
>
> Anthony
> --
> ______________________________________________
>
> Anthony Bosco - PhD Student
>
> Institute for Child Health Research
> (Company Limited by Guarantee ACN 009 278 755)
> Subiaco, Western Australia, 6008
>
> Ph 61 8 9489  , Fax 61 8 9489 7700
> email anthonyb at ichr.uwa.edu.au
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor
>

_______________________________________________
Bioconductor mailing list
Bioconductor at stat.math.ethz.ch
https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor



More information about the Bioconductor mailing list