[BioC] Normalization of Intensities

[E Motakis, Mathematics]

Hi,
I am a rather new user of Bioconductor and I have one question. Which 
function should I use to "loess" normalize gene intensities from an 
experiment conducted with AFFYMETRIX? The experiment contains 3 replicates 
with one treatment and one control condition for the genes.
I cannot understand how I should use function "read.marrayRaw" if this is 
the correct one.

Thanks in advance.

Makis

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E Motakis, Mathematics
E.Motakis at bristol.ac.uk