R: [BioC] GCRMA and Affymetrix spikeIn hgu133a

Alberto Goldoni alberto.goldoni at eurogene.org
Fri Dec 10 12:38:43 CET 2004


go to this site there are the email of the people that can help you

best regards

-----Messaggio originale-----
Da: bioconductor-bounces at stat.math.ethz.ch
[mailto:bioconductor-bounces at stat.math.ethz.ch] Per conto di Raffaele
Inviato: venerdì 10 dicembre 2004 11.00
A: bioconductor at stat.math.ethz.ch
Oggetto: [BioC] GCRMA and Affymetrix spikeIn hgu133a

I was trying to generate an exprSet starting from the Affymetrix spikeIn

data (hgu133atag) using gcrma, but the probe packages (unix, win32) are 
not present in the bioconductor metadata dir. I tryied to use a previous

version of the probes package (hgu133atagcdf_1.4.3.zip, 
hgu133atagprobe_0.0.1.tar.gz) but in both cases loading the library I 
get the following error:
Error in library(pkg, character.only = TRUE) :
        'hgu133atagprobe' is not a valid package -- installed < 2.0.0?

How can I build a new probe package working under R 2.0 and Bioconductor

1.5 ?

I have R 2.0 and Bioconductor 1.5 installed both on fedora 2 and winXP.



Prof. Raffaele A. Calogero
Bioinformatics and Genomics Unit
Dipartimento di Scienze Cliniche e Biologiche
c/o Az. Ospedaliera S. Luigi
Regione Gonzole 10, Orbassano
10043 Torino
tel.   ++39 0116705420
Lab.   ++39 0116705408
Fax    ++39 0119038639
Mobile ++39 3333827080
email: raffaele.calogero at unito.it
www:   www.bioinformatica.unito.it

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