[BioC] Common microarray clustering method

Mourad Atlas matlas at iman.cs.gsu.edu
Sun Dec 12 18:04:31 CET 2004


try this,

http://www.mathstat.gsu.edu/%7Ematsnd/clustering/supp.htm
http://www.mathstat.gsu.edu/%7Ematsnd/clustering/validation.txt


Hi,
> I'm looking for a most commonly used microarray clustering method. The
> main problem is in deciding upon the appropriate amount of clusters to
> use in the clustering, both in the agglomerative and teh partitioning
> methods.
> I know there are certain procedures such as MSS or v-fold cross
> validation, which I might run. This would allow me to compare
> clusterings resulting from incrementing the K (amount of clusters to use).
> The main point is not only to find the best clustering algorithm, but a
> not less importantly, commonly used.
>
> Thanks,
> Ilya.
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
>



More information about the Bioconductor mailing list