[BioC] pathway analysis package

[Josephine Liang]

Hi, Robert and Saurin;

In the release 1.5, I find the KEGGSOAP, RBGL and Rgraphiviz packages, 
but not KEGG?  Any pointers


Thanks
Josephine

Saurin D. Jani wrote:

>Hi,
>
>Regarding Pathway analysis: 
>
>In bioconductor when I load: library(KEGG)
>
>I can do this:
>kegg <- as.list(rae230aPATH2PROBE);
>
>and I can generate heatmap of pathway probes which are involved in my DEgenes
>so, I can see which genes are up and down in perticular pathway.
>
>how can I use interaction data extracted from human BioCarta pathways for my
>differentially expressed genes?
>
>if anyone has done please let me know...
>
>
>Thank you,
>Saurin
>
>
>  
>