[BioC] Annotation of yeast "ygs98" chip

John Zhang jzhang at jimmy.harvard.edu
Fri Dec 17 22:33:06 CET 2004

The annotation for the yeast chip is a little different. The package does not 
have a SYMBOL environment.

>Date: Fri, 17 Dec 2004 14:10:48 -0500
>From: Xinghua Lu <lux at musc.edu>
>User-Agent: Mozilla Thunderbird 1.0 (X11/20041206)
>X-Accept-Language: en-us, en
>MIME-Version: 1.0
>To: bioconductor at stat.math.ethz.ch
>Content-Transfer-Encoding: 7bit
>X-MUSC-MailScanner-Information: Please contact postmstr at musc.edu for more 
>X-MUSC-MailScanner: Found to be clean
>X-MUSC-MailScanner-SpamCheck: not spam (whitelisted), SpamAssassin 
(score=0.229, required 2, AWL 0.23)
>X-MailScanner-From: lux at musc.edu
>Received-SPF: none (hypatia: domain of bioconductor-bounces at stat.math.ethz.ch 
does not designate permitted sender hosts)
>Received-SPF: none (hypatia: domain of lux at musc.edu does not designate 
permitted sender hosts)
>X-Virus-Scanned: by amavisd-new at stat.math.ethz.ch
>X-Mailman-Approved-At: Fri, 17 Dec 2004 22:20:24 +0100
>Subject: [BioC] Annotation of yeast "ygs98" chip
>X-BeenThere: bioconductor at stat.math.ethz.ch
>X-Mailman-Version: 2.1.5
>List-Id: The Bioconductor Project Mailing List <bioconductor.stat.math.ethz.ch>
>List-Unsubscribe: <https://stat.ethz.ch/mailman/listinfo/bioconductor>, 
<mailto:bioconductor-request at stat.math.ethz.ch?subject=unsubscribe>
>List-Archive: <https://stat.ethz.ch/pipermail/bioconductor>
>List-Post: <mailto:bioconductor at stat.math.ethz.ch>
>List-Help: <mailto:bioconductor-request at stat.math.ethz.ch?subject=help>
>List-Subscribe: <https://stat.ethz.ch/mailman/listinfo/bioconductor>, 
<mailto:bioconductor-request at stat.math.ethz.ch?subject=subscribe>
>X-Spam-Checker-Version: SpamAssassin 2.60-rc1 (1.197-2003-08-21-exp) on  
>X-Spam-Status: No, hits=0.0 required=5.0 tests=none autolearn=ham 
>Dear all,
> I tried to use 'annaffy' to retrieve symbols for a set of probe-ids 
>from for 'ygs98' as follows:
> >aafSymbol(probeids, data at annotation)
>Loading required package: ygs98
>Error in mget(c("10007_at", "10055_at", "10058_at", "10062_at", 
>"10102_at",  :
>        Object "ygs98SYMBOL" not found
>As shown from the prompt that 'Object "ygs98SYMBOL" not found'.  I am 
>not sure the cause of the error.  Thanks advance for your help.
>Xinghua Lu MD,PhD
>Assistant Professor 
>Dept of Biostatistics, Bioinformatics and Epidemiology
>Medical University of South Carolina
>135 Cannon St, Suite 303
>Charleston, SC 29425-250835
>Tel: 843-876-1111
>FAX: 843-876-1126
>Bioconductor mailing list
>Bioconductor at stat.math.ethz.ch

Jianhua Zhang
Department of Biostatistics
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084

More information about the Bioconductor mailing list