[BioC] Annotation of yeast "ygs98" chip

John Zhang jzhang at jimmy.harvard.edu
Fri Dec 17 22:33:06 CET 2004


The annotation for the yeast chip is a little different. The package does not 
have a SYMBOL environment.

>Date: Fri, 17 Dec 2004 14:10:48 -0500
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>Dear all,
>
> I tried to use 'annaffy' to retrieve symbols for a set of probe-ids 
>from for 'ygs98' as follows:
>
> >aafSymbol(probeids, data at annotation)
>Loading required package: ygs98
>Error in mget(c("10007_at", "10055_at", "10058_at", "10062_at", 
>"10102_at",  :
>        Object "ygs98SYMBOL" not found
>
>As shown from the prompt that 'Object "ygs98SYMBOL" not found'.  I am 
>not sure the cause of the error.  Thanks advance for your help.
>
>Xinghua
>
>
>-- 
>Xinghua Lu MD,PhD
>Assistant Professor 
>Dept of Biostatistics, Bioinformatics and Epidemiology
>Medical University of South Carolina
>135 Cannon St, Suite 303
>Charleston, SC 29425-250835
>Tel: 843-876-1111
>FAX: 843-876-1126
>
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Jianhua Zhang
Department of Biostatistics
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084



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