[BioC] SKY/CGH data. How do I interpret it.

S Peri biocperi at yahoo.com
Tue Dec 28 17:19:45 CET 2004


Hi, 
 i am trying to make sense of CGH/SKY data. Can any
one who had worked with this kind of data help me to
understand the logic of this kind of representation of
the karyotype. How can I interpret the deletions and
additions. Apologies, if this question is out of place
here, but I did not find any other place where most
bioinformatics people visit.

Thank you in advance.
Peri. 

Karyotype:
55-90<3n->,X,-X,-X,-1,del(1)(p11),-2,t(2;11)(q32;q23),der(2)t(2;11)(q32;q23),der(3;15)(q10;q10),
+der(3;15)(q10;q10),-4,del(5)(q13),+der(5;8)(p10;q10),+der(5;8)(p10;p10)del(8)(q22),
+der(5;6)(p10;q10),+der(5)t(5;11)(?;q2?4)del(11)(q12),+6,idic(6)(q11),ace(6),+7,
-7,?inv(7)(p14;q21),+8,+8,+8,-9,+del(9)(q11),-10,der(11)t(2;11)(q32;q23)del(11)(p11),
der(?11)t(5;11)(?;p11)t(11;21)(q23;?),der(11)t(11;18)(q24;?),+der(11)t(11;18)(q24;?)t(16;18)(?;?),
+der(?11)t(11;21)(q23;?)del(11)(p11),-12,-13,-13,-14,-14,der(14)t(5;14)(?;p11),der(14;17)(q10;p10),
-15,der(15)t(15;16),-16,i(17)(p10),i(17)(q10),+19,-19,der(19)t(5;19)(q13;q13),+20,
+21,-21,+22



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