[BioC] Sequence data and filtering

Justin Borevitz borevitz at uchicago.edu
Fri Dec 31 06:39:30 CET 2004

Hi Hrishi, load the probe package for your array type, which contains the
sequence of the 25mers.


my.out.seq <- hgu95av2probe$sequence[out.of.bounds]
my.in.seq <- hgu95av2probe$sequence[in.bounds]

Justin Borevitz
Ecology and Evolution (CLSC 915E)
University of Chicago
1101 E. 57th St.
Chicago, IL 60637 USA

Message: 15
Date: Tue, 28 Dec 2004 12:41:22 -0800 (PST)
From: hrishikesh deshmukh <d_hrishikesh at yahoo.com>
Subject: [BioC] Sequence data and filtering
To: bioconductor at stat.math.ethz.ch
Message-ID: <20041228204122.92550.qmail at web50301.mail.yahoo.com>
Content-Type: text/plain; charset=us-ascii

Dear Bioconductorians,

My sincere apologies if this email is duplicated.I
have searched the mailing list and could not find a
way to solve my problem: Find out the probe intensity
(PM adn MM) for HG_U95Av2 which fall in (200 to 20000
units) range and extract their respective PM
sequences. I have been able to filter the probes but
how do i extract the sequence data?! I am including
the small script which i have written for filtering,
now how do i extract sequence information.

Thanks in advance.


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