[BioC] qc.stats error with mgu74av2

[Dick Beyer]

I have tried to use qc.stats from simpleaffy with mgu74av2 chips:

qc <- qc.stats(x.raw,x.mas5)
Getting probe level data...
Computing p-values
Doing PMA Calls
Error in cbind(det$call["AFFX-r2-Ec-bioB-3_at", ], det$call["AFFX-r2-Ec-bioC-3_at",  : subscript out of bounds

I believe AFFX-r2-Ec-bioB-3_at is on the hgu133 chip, but not the mgu74av2 chip.  The qc.stats code needs a switch for spikes that is chip dependent?

Thanks,
Dick
*******************************************************************************
Richard P. Beyer, Ph.D.	University of Washington
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