[BioC] XML installation

Roger Vallejo rvallejo at psu.edu
Wed Feb 4 19:59:49 MET 2004


I am trying to install the XML and AnnBuilder packages in a SUN SOLARIS.
I have problems installing the XML. I got these error messages (please
see below). 

I can guess that the problem is due to this:

 

checking for xml-config... no

checking for xml2-config... no

Cannot find xml2-config

 

I would appreciate any hint on how to fix this problem. Thanks a lot. 

Roger

 

############################################# 

> options(CRAN = "http://cran.r-project.org/")

> install.packages("XML", "~/r181/library") 

trying URL `http://cran.r-project.org//src/contrib/PACKAGES'

Content type `text/plain; charset=iso-8859-1' length 156484 bytes

opened URL

.......... .......... .......... .......... ..........

.......... .......... .......... .......... ..........

.......... .......... .......... .......... ..........

..

downloaded 152Kb

 

trying URL `http://cran.r-project.org//src/contrib/XML_0.95-6.tar.gz'

Content type `application/x-tar' length 551360 bytes

opened URL

.......... .......... .......... .......... ..........

.......... .......... .......... .......... ..........

.......... .......... .......... .......... ..........

.......... .......... .......... .......... ..........

.......... .......... .......... .......... ..........

.......... .......... .......... .......... ..........

.......... .......... .......... .......... ..........

.......... .......... .......... .......... ..........

.......... .......... .......... .......... ..........

.......... .......... .......... .......... ..........

.......... .......... .......... ........

downloaded 538Kb

 

* Installing *source* package 'XML' ...

checking for gcc... gcc

checking for C compiler default output... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables... 

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ANSI C... none needed

checking how to run the C preprocessor... gcc -E

checking for xml-config... no

checking for xml2-config... no

Cannot find xml2-config

ERROR: configuration failed for package 'XML'

** Removing
'/.../dce.psu.edu/fs/users/r/l/rlv10/r181/~/r181/library/XML'

################################3

 

Roger L. Vallejo, Ph.D.

Assist. Professor of Genomics & Bioinformatics

The Pennsylvania State University

Department of Dairy & Animal Science

305 Henning Building

University Park, PA 16802

Phone:  (814) 865-1846 

Fax: (814) 863-6042

Email:   rvallejo at psu.edu <mailto:rvallejo at psu.edu> 

 


	[[alternative HTML version deleted]]



More information about the Bioconductor mailing list