[BioC] (no subject)
Gordon K Smyth
smyth at wehi.EDU.AU
Sun Feb 29 01:21:24 MET 2004
> I have a limma question. I have some proteomic data which I would like
> to analyze using limma and compare the results to that using LPE. What I
> have is a couple of data frames with genes in rows and experiments in
> columns, similar to Affymetrix data like single-channel design. How can
> I plug in these data into available functions in limma to do the
> analysis. Maybe I have missed something but looks like limma only takes
> eset from Affy data? Can I directly replace eset with my data.frame in
> when calling lmFit function?
The function lmFit() accepts any sort of input for the expression
information: matrix, data.frame, exprSet etc.
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