[BioC] short time-course design. Any suggestion?

Matthew Hannah Hannah at mpimp-golm.mpg.de
Tue Jul 20 12:51:49 CEST 2004

Not too in depth but in my view it would be improved by using GCRMA or RMA,
ignoring PA calls. Doing an unbiased analysis and then looking at the GO 
annotations of the differentially expressed genes after the analysis.

I can't really advise on the ANOVA, but I guess Limma would be worth a look.


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