[BioC] LIMMA: normalizeBetweenArrays

[S_Thieme]

Hello,

I've a question concerning Gquantile (also Rquantile) normalization between 
arrays. Did I understand it right that this normalization "prefers" one 
channel (G or R) without regarding the experimental design, which may be 
given by a design matrix. So any dye swap is not respected.
Is that right?

For Tquantile: If I define targets for normalization all the other none 
defined are not processed? Or did they treated like using the composite 
normalization method ?

Thanks!

Sebastian