[BioC] LimmaGUI spot type files

[Elizabeth Brooke-Powell]

Gordon,
 
Just one point of clarification, do you mean the order of spot types must be
like this:
 

SpotType
ID
Name
Color

Control 
*
*
orange

Est
TgEST*
*
black

Vector
Bluescript*
*
yellow

Empty
*
unknown
red

Water
*
Water
blue
 
As opposed to this:
 
 

SpotType
ID
Name
Color

Est
TgEST*
*
black

Vector
Bluescript*
*
yellow

Empty
*
unknown
red

Water
*
Water
blue

Control 
*
*
orange
 
Thank you for your help,
 
Liz
 
-----Original Message-----
From: Gordon Smyth [mailto:smyth at wehi.edu.au] 
Sent: 27 July 2004 08:07
To: Elizabeth Brooke-Powell
Cc: bioconductor at stat.math.ethz.ch
Subject: Re: [BioC] LimmaGUI spot type files
 
At 09:42 PM 26/07/2004, Elizabeth Brooke-Powell wrote:
>Hi there,
> 
>I was wondering if someone might be able to answer what I hope is a very
>simple question about LimmaGUI's spot type files.
>Do you have to type the full name in the file or can you use partial names
>with an asterisk? For example all of my gene IDs always start with TgEST
>followed by various numbers, can I type TgEST* to identify all genes and
>then * for all controls? All of my controls have different sorts of names.
 
Yes, this will work. However you must put the * for controls before the 
TgEST* line in your spot types file.
 
Gordon
 

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