[BioC] AnnBuilder error ....

John Zhang jzhang at jimmy.harvard.edu
Tue Jun 1 17:31:24 CEST 2004

Golden Path has changed the downloading site from http://www.genome.ucsc.edu/ to 
 http://hgdownload.cse.ucsc.edu/. I checked the new site and found that build 
hg17 was not there. I will write to Golden Path to see what happened. I can 
patch AnnBuilder to use hg16 instead the latest build but am afriad that it may 
not help as hg16 (currently available) is too old (July 2003). I will let you 
know what Golden Path says about hg17. 

>Date: Tue, 1 Jun 2004 10:44:25 -0400 (EDT)
>From: Mayte Suarez-Farinas <mayte at babel.rockefeller.edu>
>To: bioconductor at stat.math.ethz.ch
>MIME-Version: 1.0
>Received-SPF: none (hypatia: domain of bioconductor-bounces at stat.math.ethz.ch 
does not designate permitted sender hosts)
>Received-SPF: none (hypatia: domain of mayte at babel.rockefeller.edu does not 
designate permitted sender hosts)
>X-Virus-Scanned: by amavisd-new at stat.math.ethz.ch
>X-Spam-Checker-Version: SpamAssassin 2.63 (2004-01-11) on hypatia.math.ethz.ch
>X-Spam-Status: No, hits=-0.8 required=5.0 tests=AWL autolearn=no version=2.63
>Subject: [BioC] AnnBuilder error ....
>X-BeenThere: bioconductor at stat.math.ethz.ch
>X-Mailman-Version: 2.1.5
>List-Id: The Bioconductor Project Mailing List <bioconductor.stat.math.ethz.ch>
<mailto:bioconductor-request at stat.math.ethz.ch?subject=unsubscribe>
>List-Archive: <https://www.stat.math.ethz.ch/pipermail/bioconductor>
>List-Post: <mailto:bioconductor at stat.math.ethz.ch>
>List-Help: <mailto:bioconductor-request at stat.math.ethz.ch?subject=help>
>List-Subscribe: <https://www.stat.math.ethz.ch/mailman/listinfo/bioconductor>,  
<mailto:bioconductor-request at stat.math.ethz.ch?subject=subscribe>
>Hi !
>I got the following message while running AnnBPkgBuilder function.
>Couls somebody tell me what is going on ???
>Warning message:
>cannot open: HTTP status was `404 Not Found'
>Error in loadFromUrl(srcUrl) : URL 
>tabase/refLink.txt.gz is incorrect or the target site is not responding!
>Error in ABPkgBuilder(baseName = file.path(myDir, "AnnTh"), srcUrls = 
>"ALL",  :
>        Failed to parse Golden Path data because of:
> Error in loadFromUrl(srcUrl) : URL 
>atabase/refLink.txt.gz is incorrect or the target site is not responding!
>Mayte Suarez Farinas
>The Rockefeller University
>1230 York Avenue, Box 212
>New York, NY 10021
>phone: 1-212-327-8186
>fax:   1-212-327-7422
>Bioconductor mailing list
>Bioconductor at stat.math.ethz.ch

Jianhua Zhang
Department of Biostatistics
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084

More information about the Bioconductor mailing list