[BioC] Problem with obtaining annotation of mgu74av2 chip

[Richard Friedman]

On May 31, 2004, at 4:39 PM, Robert Gentleman wrote:

>  library(reposTools)
>  install.packages2("GO")
>  install.packages2("KEGG")
>
>  then
>   library("GO")
>  and
>   library("KEGG")
>
>  should get you going
>

It worked. Thanks

>>
>> I also loaded the datasets
>>
>> loading dataset: mgu74av2GO
>> loading dataset: mgu74av2GO2ALLPROBES
>> loading dataset: mgu74av2GO2PROBE
>>
>
>  hmm - what command did you issue? This is not something you need to
>  do. The GO and KEGG packages are separate from the organism
>  packages. You might want to look at the vignette in annotate for an
>  overview.

I used the "datasets manager" pull down menu.

Best wishes,
Rich



>
>>>> ------------------------------------------------------------
>>>> Richard A. Friedman, PhD
>>>> Associate Research Scientist
>>>> Herbert Irving Comprehensive Cancer Center
>>>> Oncoinformatics Core
>>>> Lecturer
>>>> Department of Biomedical Informatics
>>>> Box 95, Room 130BB or P&S 1-420C
>>>> Columbia University Medical Center
>>>> 630 W. 168th St.
>>>> New York, NY 10032
>>>> (212)305-6901 (5-6901) (voice)
>>>> friedman at cancercenter.columbia.edu
>>>> http://cancercenter.columbia.edu/~friedman/
>>>>
>>>> "I'm giving up coffee. Now that it looks like I might top
>>>> 6 feet, I don't want to risk spoiling it."
>>>> - Isaac Friedman, age 14
>>>>
>>>>
>>>>
>>>
>>>