[BioC] Anopheles/malaria Affy chips

Jason Skelton jps at sanger.ac.uk
Tue Jun 8 19:06:15 CEST 2004

Hello everybody,

I would like to know if anyone used the Anopheles/malaria Affymetrix 
chips in bioconductor or any other 2-genome-chip but hybridising with 
one genome only? I do, and hybridise with 1 species only, resulting in a 
problematic normalisation procedure.
I tried Affy, simpleaffy and affylmGUI, and can't manage to have good 
statistics while I have no problem at all using a 1 species chip. Any 
suggestion would be largely appreciated.
Thanks a lot


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