[BioC] New package
jgentry at jimmy.harvard.edu
Tue Jun 15 22:41:57 CEST 2004
I have just put a new package in the system, contributed by Xiaogang
Zhong, Leslie Cope, Elizabeth Garret and Giovanni Parmigiani. The package
is named 'MergeMaid', and it should be available to the public tommorow
morning (Eastern US time)
Title: Merge Maid
Author: Xiaogang Zhong <zhong at ams.jhu.edu> Leslie Cope <cope at jhu.edu>
<esg at jhu.edu> Giovanni Parmigiani <gp at jhu.edu>
Maintainer: Xiaogang Zhong <zhong at ams.jhu.edu>
Description: The functions in this R extension are intended for
cross-study comparison of gene expression array data. Required
from the user is gene expression matrices, their corresponding
gene-id vectors and other useful information, and they could
be 'list','matrix','exprSet'. The main function is 'mergeExprs'
which transforms the input objects into data in the merged format,
such that common genes in different datasets can be easily found.
And the function 'intcor' calculate the correlation coefficients.
Other functions use the output from 'modelOutcome' to graphically
display the results and cross-validate associations of gene
expression data with survival.
Depends: R (>= 1.7.0), survival
License: GPL version 2 or higher
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