[BioC] affylmGUI exporting (was: Limma GUI exporting)

James Wettenhall wettenhall at wehi.edu.au
Fri Jun 25 06:13:57 CEST 2004


On Thu, 24 Jun 2004, James Wettenhall wrote:
> I'll do something similar for affylmGUI soon.

This is done now in affylmGUI 1.1.4, available from:

Should appear on BioC devel soon.


affylmGUI 1.1.4 Changes

- Export Normalized Expression Values has been added to the File 
    menu and will eventually be removed from the Normalization
- The probe-set-IDs were already included when exporting 
    expression data from affylmGUI, so there was no need to add 
    extra column(s) as was done in the recent limmaGUI update.
- Now when tab-delimited text files are exported from affylmGUI
   (normalized expression values), the default extension is
   ".xls", so that you can double-click to open them in Excel.
- Handling of temporary files has been cleaned up a bit.  If
    using the advanced "Evaluate R code" functionality, which
    evaluates R code within affylmGUIenvironment, (the 
    environment containing the current microarray data set),
    any temporary files required are now saved to tempfile()
    rather than to the current working directory.

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