[BioC] memory

[Joshi, Nina (NIH/NCI)]

I am using the NIH Nimbus system (unix) to analyze 140 chips with
bioconductor.  I can upload 10 chips without a problem; however, when I try
to upload the 140 chips I receive an error: cannot allocate vector of size
526746 KB.  I increased the memory in unix as follows:  R -vsize=2500M
-nsize=24M.  While this command increased the memory, I still receive the
same error message.  Does anyone have another idea?  

 

Thanks,

 

Nina

 

 

 

 

Nina Joshi, PhD

NIH/NCI/ Genetics Branch

National Naval Medical Center, Bldg. 8, Rm. 5101

8901 Wisconsin Ave.

Bethesda, MD. 20889-5101

(301) 435-5436 - phone

(301) 496-0047 - fax

 

 


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