[BioC] rma and gcrma do not work in R 1.9.0

Ben Bolstad bolstad at stat.berkeley.edu
Fri May 14 19:09:26 CEST 2004


Could you please try updating your packages. The current version of the
affy package is 1.4.29 and other packages may also be out of date.

Thanks,

Ben





On Fri, 2004-05-14 at 06:57, Li, James [PRDUS Non-J&J] wrote:
> I run R 1.9.0 on windows 2000, and have the following libraries installed:
> 
> affydata_1.3.1
> affy_1.4.23
> Biobase_1.4.10
> DynDoc_1.3.14
> gcrma_1.0.6
> hgu133acdf_1.4.3
> hgu95av2cdf_1.4.3
> hgu95av2probe_1.0
> matchprobes_1.0.7
> moe430acdf_1.4.3
> multcomp_0.4-6
> mvtnorm_0.6-6
> rae230acdf_1.4.3
> reposTools_1.3.29
> rgu34acdf_1.4.3
> tkWidgets_1.5.1
> widgetTools_1.2.7
> 
> 1. The rma function (in affy library) always crashes.
> 2. When executing the sample code in gcrma function's document, the
> following error occures:
> 	Loading required package: matchprobes 
> 	Error in f(libname, pkgname) : couldn't find function
> "addVigs2WinMenu"
> 
> Does any one known any quick fix or workaround?
> 
> James
> 
> 	[[alternative HTML version deleted]]
> 
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-- 
Ben Bolstad <bolstad at stat.berkeley.edu>
http://www.stat.berkeley.edu/~bolstad



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