[BioC] how to get mismatch probe coordinates

[ulas karaoz]

thanks. That is not exactly what i meant, what i meant was given a 
probe's coordinates from the AFFY files, i.e. HG-U133A_probe_tab, how 
do I figure out the coordinates for the corresponding mismatch probe.
Is this info stored somewhere if i read the cdf file with read.cdffile 
in makecdfenv package?
thanks.


On Oct 31, 2004, at 8:02 PM, James MacDonald wrote:

> ?indexProbes
>
>
>
> James W. MacDonald
> Affymetrix and cDNA Microarray Core
> University of Michigan Cancer Center
> 1500 E. Medical Center Drive
> 7410 CCGC
> Ann Arbor MI 48109
> 734-647-5623
>>>> ulas karaoz <ulask at bu.edu> 10/31/04 7:19 PM >>>
> Dear Bioconductor users,
> Does anyone knows how to get the coordinates (x,y) for a specific chip?
> Once I know the (x,y) of a match probe, is there any formula to get the
> (x,y) of the corresponding mismatch probe?
> thanks.
>
> --------------------------------------------
> Ulas Karaoz
> Boston University
> Ph.D.Student in Bioinformatics
> zlab.bu.edu
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
>
>
>
> **********************************************************
> Electronic Mail is not secure, may not be read every day, and should 
> not be used for urgent or sensitive issues.
>
>
>
--------------------------------------------
Ulas Karaoz
Boston University
Ph.D.Student in Bioinformatics
zlab.bu.edu