[BioC] Failure to install Rgraphviz

[John Cornell]

I updated to R 2.0.0.  As I reinstalled the bioconductor packages I received
an error message about a dependency that failed to install.  The full text
of the download/installation is listed below.  As a novice user of both R
and bioconductor, I need to understand the meaning of this type of failure
and how to solve the problem.  I appreciate any information and advice you
may have about this type of error message.

 

Thank you,

 

John E. Cornell, Ph.D.

Center for Epidemiology and Biostatistics

University of Texas Health Science Center, San Antonio

 

FULL TEXT FROM ATTEMPTED DOWNLOAD/INSTILATION:

 

trying URL `http://www.bioconductor.org/bin/windows/contrib/2.0/PACKAGES'

Content type `text/plain' length 46409 bytes

opened URL

downloaded 45Kb

 

dependencies 'SSOAP''XML''NA' are not available

 

also installing the dependencies 'Rgraphviz'

 

trying URL
`http://www.bioconductor.org/bin/windows/contrib/2.0/Rgraphviz_1.5.0.zip'

Content type `text/html' length unknown

opened URL

downloaded 1119 bytes

 

trying URL
`http://www.bioconductor.org/bin/windows/contrib/2.0/GeneTS_2.3.zip'

Content type `application/zip' length 352822 bytes

opened URL

downloaded 344Kb

 

trying URL
`http://www.bioconductor.org/bin/windows/contrib/2.0/GeneTraffic_1.0.6.zip'

Content type `application/zip' length 222020 bytes

opened URL

downloaded 216Kb

 

trying URL
`http://www.bioconductor.org/bin/windows/contrib/2.0/GraphAT_1.0.0.zip'

Content type `application/zip' length 6135001 bytes

opened URL

downloaded 5991Kb

 

trying URL
`http://www.bioconductor.org/bin/windows/contrib/2.0/HEM_1.0.4.zip'

Content type `application/zip' length 4020032 bytes

opened URL

downloaded 3925Kb

 

Error in file(file, "r") : unable to open connection

In addition: Warning messages: 

1: error 1 in extracting from zip file 

2: cannot open file `Rgraphviz/DESCRIPTION'


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