[BioC] install Rgraphviz and graphviz MAC OSX 10.3.5

[Robert Gentleman]

On Tue, Oct 12, 2004 at 04:50:53PM +0200, Ingmar Visser wrote:
> 
> Hi All,
> I'm trying to install Rgraphviz and graphviz on my MAC  with OSX 10.3.5
> but I'm failing miserably so far:
> 
> This is the error I get when installing graphviz (using ./configure and make
> from the terminal):
> 
> 
>  gcc -DHAVE_CONFIG_H -I. -I. -I../../.. -I../../../lefty
> -I/usr/local/include -I/usr/X11R6/include -g -O2 -fno-common -Wall -DNDEBUG
> -MT garray.lo -MD -MP -MF .deps/garray.Tpo -c garray.c  -fno-common -DPIC -o
> .libs/garray.o
> In file included from /usr/include/sys/select.h:71,
>                  from ../../../lefty/common.h:66,
>                  from garray.c:3:
> /usr/include/sys/event.h:68: error: parse error before "u_short"
> /usr/include/sys/event.h:72: error: parse error before '}' token
> In file included from ../../../lefty/common.h:66,
>                  from garray.c:3:
> /usr/include/sys/select.h:88: error: parse error before "u_int"
> In file included from garray.c:3:
> ../../../lefty/common.h:132: error: conflicting types for `panic'
> /usr/include/mach/mach.h:79: error: previous declaration of `panic'
> make[5]: *** [garray.lo] Error 1
> make[4]: *** [all-recursive] Error 1
> make[3]: *** [all-recursive] Error 1
> make[2]: *** [all-recursive] Error 1
> make[1]: *** [all-recursive] Error 1
> make: *** [all] Error 2
> 
> Any tips or hints are welcome.
> 
> This is graphviz version 1.16, the latest version AFAIK.

  And the documentation is pretty explicit that this is not supported
  (yet) AFAIK.

 And if you checked in the graphviz mailing lists you would see that
 1.16 seems problematic against FreeBSD (and if you checked under the
 hood of 10.3.5 you would find a FreeBSD variant), so that might just
 explain most of it....


> 
> thanks in advance, ingmar
> 
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| Robert Gentleman                 phone : (617) 632-5250                   |
| Associate Professor              fax:   (617)  632-2444                   |
| Department of Biostatistics      office: M1B20                            |
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